| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 77748743
Identifier: 77748743
GI number: 77748743
Start: 4476327
End: 4477595
Strand: Direct
Name: 77748743
Synonym: XAC3806
Alternate gene names: NA
Gene position: 4476327-4477595 (Clockwise)
Preceding gene: 77748742
Following gene: 21244531
Centisome position: 86.49
GC content: 68.09
Gene sequence:
>1269_bases ATGACGCAGTGGTACTACGCCGACGCACAGCGGCAGCGCCAGGGGCCGGTGGACACGGACACGCTTCGTGCGCGCCTGTC GCAGGGCATCGTCGACGGCTCCAGCCTGGTCTGGCGCGAAGGTCTGGCGCAGTGGGTGGCACTGCACGAGGTCGAGGGCG AGCTAGGCTTCGGCGGCGCAGCGCCGGCCGCGGGCCCGGAAGCCAGCGGGCCGATGCCGGCGGATGCGACACGCCATGCG CCACTGTCGGCTGCGTATCCCGGCGACAACCCGCCGGCCACAGCCTCGGCTTCCGCAACCTTGCCGATCGACGACCACGC CGCTGAAACATCGCGCTGGCCGCCGGCAGTTGCCGGCGGCGGCATTGCCGGTGCGAGTGCCAGCACCAATGATGCCGGCG CGACTGACGATGCCGGTCACCACCCGGCAATCGACTCCCCACTACATCCGCCGCGCGATCAATCCCCGTTATCGGACCCG TCGGCATGGTCCACCGCGCCGCTGGCGTCAGATCCAAGCCCGACCACGACCTCGAGCACCACGCCGACACCGGGTCACAC CCCGGCAGCGGCGACCGCGCCACCTCCAGGGGCCTGGGATGCCCCGGCCCCCGCTGCCGCCGCAGCAGGCCTGGCGCTGC AGGATGCGCCAGTGGTCTACGCCGGTCTTTGGCGGCGCGTGGCCGCCAGCATTCTCGATAGCTTGATCACCACCTTTGCG GTGTACCTGATCGTGATCCCGCTGGTGTTCGTGGTGGCGCTGGTCACCACGCGCGGCGATTCAGGTTCGGCGTTGGACAA CGGCAGTGCGCTCGGCATCGCCATCGTGGTGATGTCCTATGGCATCGGCCTGGCCATCCCGACGCTGTATTTCGCCTGGA TGCAGTCCAGCCGGCATCAGGCCAGCCTGGGCAAGCTCGCCTGCGGCATCAAGCTGGTGCGTGCCGACAGCAACGGCGGC CGGGTCGGATTCTGGCGCAATGTGCTGCGCTATCTGGCCTACATGCTGATCAGCGTGCTGACCCTGGGCATCGGGGTGAT CGTGGCGGCCTTCATGGCCGGCATGACCGAGCGCAAGCAGGCCCCGCACGACAAGGTCTGCGACACCCTGGTCGTGGACC GTTGGGCGTTCACCGAGCATCCGGAGCGGCAATCCAGAGGATTGGATACCGTGTCCATCGTGGTTCTGGCCATTTACGGG CTGATCCTGGTGCTCTCGGTGGTGGTCGTGGCCTTCATGCTGGCGGCGATCGGAATGAGTCAAAGCTAG
Upstream 100 bases:
>100_bases GCTGGCGGTGCAGTTCCGAAATCGACGACACCCAACTTCCACCGGATTGCCGCGGCTGACCGCCTGCTGCATGCCGATCG CGACACGCTAAGGGGACAAC
Downstream 100 bases:
>100_bases CAGTTCACGGCGCTGGCCGCTTGACACGGCGACGCCCGCCGTGATCTTTCTAATAAGAGAACTGAACGCCCGGGAGTCCT TCCCGGGCGTTAACGCGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: Rdd Domain Containing Protein; Integral Inner Membrane Protein; Transmembrane RDD Family Protein; Rdd-Family Protein; Transmembrane Rdd Family Protein
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MTQWYYADAQRQRQGPVDTDTLRARLSQGIVDGSSLVWREGLAQWVALHEVEGELGFGGAAPAAGPEASGPMPADATRHA PLSAAYPGDNPPATASASATLPIDDHAAETSRWPPAVAGGGIAGASASTNDAGATDDAGHHPAIDSPLHPPRDQSPLSDP SAWSTAPLASDPSPTTTSSTTPTPGHTPAAATAPPPGAWDAPAPAAAAAGLALQDAPVVYAGLWRRVAASILDSLITTFA VYLIVIPLVFVVALVTTRGDSGSALDNGSALGIAIVVMSYGIGLAIPTLYFAWMQSSRHQASLGKLACGIKLVRADSNGG RVGFWRNVLRYLAYMLISVLTLGIGVIVAAFMAGMTERKQAPHDKVCDTLVVDRWAFTEHPERQSRGLDTVSIVVLAIYG LILVLSVVVVAFMLAAIGMSQS
Sequences:
>Translated_422_residues MTQWYYADAQRQRQGPVDTDTLRARLSQGIVDGSSLVWREGLAQWVALHEVEGELGFGGAAPAAGPEASGPMPADATRHA PLSAAYPGDNPPATASASATLPIDDHAAETSRWPPAVAGGGIAGASASTNDAGATDDAGHHPAIDSPLHPPRDQSPLSDP SAWSTAPLASDPSPTTTSSTTPTPGHTPAAATAPPPGAWDAPAPAAAAAGLALQDAPVVYAGLWRRVAASILDSLITTFA VYLIVIPLVFVVALVTTRGDSGSALDNGSALGIAIVVMSYGIGLAIPTLYFAWMQSSRHQASLGKLACGIKLVRADSNGG RVGFWRNVLRYLAYMLISVLTLGIGVIVAAFMAGMTERKQAPHDKVCDTLVVDRWAFTEHPERQSRGLDTVSIVVLAIYG LILVLSVVVVAFMLAAIGMSQS >Mature_421_residues TQWYYADAQRQRQGPVDTDTLRARLSQGIVDGSSLVWREGLAQWVALHEVEGELGFGGAAPAAGPEASGPMPADATRHAP LSAAYPGDNPPATASASATLPIDDHAAETSRWPPAVAGGGIAGASASTNDAGATDDAGHHPAIDSPLHPPRDQSPLSDPS AWSTAPLASDPSPTTTSSTTPTPGHTPAAATAPPPGAWDAPAPAAAAAGLALQDAPVVYAGLWRRVAASILDSLITTFAV YLIVIPLVFVVALVTTRGDSGSALDNGSALGIAIVVMSYGIGLAIPTLYFAWMQSSRHQASLGKLACGIKLVRADSNGGR VGFWRNVLRYLAYMLISVLTLGIGVIVAAFMAGMTERKQAPHDKVCDTLVVDRWAFTEHPERQSRGLDTVSIVVLAIYGL ILVLSVVVVAFMLAAIGMSQS
Specific function: Unknown
COG id: COG1714
COG function: function code S; Predicted membrane protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43618; Mature: 43487
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQWYYADAQRQRQGPVDTDTLRARLSQGIVDGSSLVWREGLAQWVALHEVEGELGFGGA CCCEEECCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC APAAGPEASGPMPADATRHAPLSAAYPGDNPPATASASATLPIDDHAAETSRWPPAVAGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHCCCCCCCCCCC GIAGASASTNDAGATDDAGHHPAIDSPLHPPRDQSPLSDPSAWSTAPLASDPSPTTTSST CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TPTPGHTPAAATAPPPGAWDAPAPAAAAAGLALQDAPVVYAGLWRRVAASILDSLITTFA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VYLIVIPLVFVVALVTTRGDSGSALDNGSALGIAIVVMSYGIGLAIPTLYFAWMQSSRHQ HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ASLGKLACGIKLVRADSNGGRVGFWRNVLRYLAYMLISVLTLGIGVIVAAFMAGMTERKQ HHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APHDKVCDTLVVDRWAFTEHPERQSRGLDTVSIVVLAIYGLILVLSVVVVAFMLAAIGMS CCHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QS CC >Mature Secondary Structure TQWYYADAQRQRQGPVDTDTLRARLSQGIVDGSSLVWREGLAQWVALHEVEGELGFGGA CCEEECCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC APAAGPEASGPMPADATRHAPLSAAYPGDNPPATASASATLPIDDHAAETSRWPPAVAGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHCCCCCCCCCCC GIAGASASTNDAGATDDAGHHPAIDSPLHPPRDQSPLSDPSAWSTAPLASDPSPTTTSST CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TPTPGHTPAAATAPPPGAWDAPAPAAAAAGLALQDAPVVYAGLWRRVAASILDSLITTFA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VYLIVIPLVFVVALVTTRGDSGSALDNGSALGIAIVVMSYGIGLAIPTLYFAWMQSSRHQ HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ASLGKLACGIKLVRADSNGGRVGFWRNVLRYLAYMLISVLTLGIGVIVAAFMAGMTERKQ HHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APHDKVCDTLVVDRWAFTEHPERQSRGLDTVSIVVLAIYGLILVLSVVVVAFMLAAIGMS CCHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA