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The map label for this gene is pilC [H]

Identifier: 77748708

GI number: 77748708

Start: 3820461

End: 3821663

Strand: Direct

Name: pilC [H]

Synonym: XAC3242

Alternate gene names: 77748708

Gene position: 3820461-3821663 (Clockwise)

Preceding gene: 21243964

Following gene: 21243969

Centisome position: 73.82

GC content: 55.11

Gene sequence:

>1203_bases
ATGAGTCCGTTTGTCTGGGAGGGGACAGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCT
GCTGCGCGCCGAGTTACGGCGCCAGGGCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAACCACTATTCGGCGCTGCCG
GAAAGAAAGTTTCCGCAAAAGACATTTCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCCGGCGTGCCGATTGTC
GGCGCGCTGGAGATCATTGGCAGCGGCCAAAAGAATCCGCGCATGCGCACAATGGTCGGACAGATTAGGACAGATATCGA
AGGGGGGGCATCGCTCTACGAAGCCGTAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAG
GCGAAGGCGCAGGGGTACTGGAAACTGTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTGAAAGGCAAG
ATCAAGAAGGCACTGTTCTACCCTGCCATGGTAATGGCAGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGT
TCCCCAATTTGAAGATGTCTTCAAGGGCTTTGGAGCGGAGCTGCCTGCGTTCACACAGATGATCGTCAACCTGTCTCGCT
TTATGGTGTCTTGGTGGTGGCTGATGCTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCA
CCAGCAATGCAACATGGCATGGACCGCCTGGTGCTAAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCAATTGC
AAGATTCGCCCGGACGACGGCGGTGACCTTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTA
CAGGTAATTCGGTCTACGAAAAAGCAGTACTGCGCATGCGCGAAGACGTCTCCGTGGGCTACCCGGTCAACGTCGCGATG
AAACAGGTCAACCTGTTTCCGCATATGGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCT
GTTCAAGGTAGCGGAGTATTTCGAGCAGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCA
TGGTGTTCATTGGTACCATCGTCGGCGGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGA
TAA

Upstream 100 bases:

>100_bases
AACATTGCTCAGGTATCCGCCTGGGGATGGTGGATGGGGAATTCACATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGA
CCGCCGCATCGGCGGAGCAG

Downstream 100 bases:

>100_bases
GACGTAATGGCATTTCTCGACCAGCATCCCGGTCTCGGCTTTCCTGCCGCGGCCGGACTGGGACTGCTGATCGGCAGCTT
CCTGAACGTGGTGATCCTGC

Product: fimbrial assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDISFFSRQMATMMKSGVPIV
GALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGK
IKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLMLFALVGAAIGSVFAYKRS
PAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAM
KQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVGGMVIGMYLPIFKLASVVG

Sequences:

>Translated_400_residues
MSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDISFFSRQMATMMKSGVPIV
GALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGK
IKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLMLFALVGAAIGSVFAYKRS
PAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAM
KQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVGGMVIGMYLPIFKLASVVG
>Mature_399_residues
SPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDISFFSRQMATMMKSGVPIVG
ALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKI
KKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLMLFALVGAAIGSVFAYKRSP
AMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKAVLRMREDVSVGYPVNVAMK
QVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVGGMVIGMYLPIFKLASVVG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=399, Percent_Identity=28.0701754385965, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1786295, Length=395, Percent_Identity=28.1012658227848, Blast_Score=161, Evalue=9e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43557; Mature: 43426

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
DISFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHP
HHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCC
VQFDELYRNLVKAGEGAGVLETVLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLMLFALVGAAIGSVFAYKRS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYE
CHHHHCHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
KAVLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNN
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AVDALSSLIEPLIMVFIGTIVGGMVIGMYLPIFKLASVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]