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The map label for this gene is rnk [H]

Identifier: 77748553

GI number: 77748553

Start: 1064918

End: 1065358

Strand: Reverse

Name: rnk [H]

Synonym: XAC0903

Alternate gene names: 77748553

Gene position: 1065358-1064918 (Counterclockwise)

Preceding gene: 21241674

Following gene: 21241672

Centisome position: 20.58

GC content: 66.44

Gene sequence:

>441_bases
ATGACTTCGCAACACCACAGCGGCTTGCCGCCATCCATTCTGGTATCCAGCCGCGACCTTGCCCGGCTTGAGGCATTGCT
CGATTCGCCAAGCTTCAACAAGCATCCCGCCGCCACTGCGCTGAGCGACGAACTGGGCCGCGCCCGTGTGCTGCCGCCCG
ACCAGATTCCCGGCGATGTCGTCACCATGCACTCACGCATCGAATGCGAAGACCAGTTGCATGGCGAACGGCATACGCTC
ACCCTCGTGTATCCGCATGAAGCCGATGTGCAGCACGGACGCATCTCGGTGCTTGCGCCGGTCGGCAGCGCGCTGCTCGG
CCTGTCGGTTGGCCAGCGCATCGATTGGCGCACGCCCGACGGACGCGACCTGCGCCTGCGCGTGACTGCCGTGCACGAGC
AACCCGCAGCGGCGGGCGACTTCCGGCGCGCAGCGCGCTAA

Upstream 100 bases:

>100_bases
TTGGTTCCGCAACATCCATGCATTGCGATCAGCCGCCGGCACCCTCATCTTGTCAGAGACGCTTGCCATGTCGGCAAGCC
GTATTCGTCAGGAGACTGCC

Downstream 100 bases:

>100_bases
CGTAGCGCGCTGCGTCCTATCCCCGACCCGTTCCACGATTCGAGAGAACCCGCATGACTGCATCCCCCTCAAAGCTTGCC
CAACTGCGTGAGCTGTCCGT

Product: regulator of nucleoside diphosphate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTSQHHSGLPPSILVSSRDLARLEALLDSPSFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTL
TLVYPHEADVQHGRISVLAPVGSALLGLSVGQRIDWRTPDGRDLRLRVTAVHEQPAAAGDFRRAAR

Sequences:

>Translated_146_residues
MTSQHHSGLPPSILVSSRDLARLEALLDSPSFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTL
TLVYPHEADVQHGRISVLAPVGSALLGLSVGQRIDWRTPDGRDLRLRVTAVHEQPAAAGDFRRAAR
>Mature_145_residues
TSQHHSGLPPSILVSSRDLARLEALLDSPSFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLT
LVYPHEADVQHGRISVLAPVGSALLGLSVGQRIDWRTPDGRDLRLRVTAVHEQPAAAGDFRRAAR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=131, Percent_Identity=42.7480916030534, Blast_Score=109, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15936; Mature: 15805

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQHHSGLPPSILVSSRDLARLEALLDSPSFNKHPAATALSDELGRARVLPPDQIPGDV
CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCE
VTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQRIDWRTPD
EEECCCCCCHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHCCCEECCCCCC
GRDLRLRVTAVHEQPAAAGDFRRAAR
CCEEEEEEEEECCCCCCCCCHHHHCC
>Mature Secondary Structure 
TSQHHSGLPPSILVSSRDLARLEALLDSPSFNKHPAATALSDELGRARVLPPDQIPGDV
CCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCE
VTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQRIDWRTPD
EEECCCCCCHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHCCCEECCCCCC
GRDLRLRVTAVHEQPAAAGDFRRAAR
CCEEEEEEEEECCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]