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The map label for this gene is ydaM [H]

Identifier: 77748542

GI number: 77748542

Start: 728152

End: 729105

Strand: Direct

Name: ydaM [H]

Synonym: XAC0614

Alternate gene names: 77748542

Gene position: 728152-729105 (Clockwise)

Preceding gene: 21241384

Following gene: 21241386

Centisome position: 14.07

GC content: 65.83

Gene sequence:

>954_bases
ATGGTGGACCTGACCGCCATCCGCGATGCGGACCTGCTCGATCTGAGCCTGTTGCGCACTGTGCGCGAAGTCTGCGCGGC
CGAAGAACTCTCGCTGCTGCGCATCGCCCCGGACAGCAACAGCATCGCCGAAACGCGGCTGCGCGACGACGGTCGGCTGG
CGCTGACGGTGGCCGAGATCCACGATGCGCGCACGCGCACCCAGCTGGCCGAGGTCCATGGGCCGGGCGATGTGGTGCAG
CTGCAGGAAGACGGTCGCGCCTTGCTGGTCTACCCGATGATGGAGGCGCGCGGCATCCGGACCTGCCTGCGGGTGGGCGG
GACGCGTATTCCCGGCCTTGCCGAGCAAGCGATGCTGCAGGGCTTTGCGCGCTTCTTCCAGAATTACCGCAGCCTGCTCG
ACGACGCCCAGCGCAATGCGCTGACCGGCCTGCGCAACCGCAAGACGTTCGACGATGTGATCCTGCGACTGTTTGCCGGT
GGTGCCGACTCCGCCGCAGAGCAGGGCGTGTGGCTGGGCATCGTGGACATCGATCACTTCAAGCGCGTCAACGACACCTT
CGGGCATCTGTATGGCGACGAGGTGCTGCTGCTGGTCGCACAGCTGATGCAGCGTGCGTTTCGACAGGACGACCTGCTGT
TCCGCTTCGGCGGCGAAGAGTTCGTGATCGTGTTGCGCGGCGTTGACCGCGACACGGCCGTGAGTCTGTTCGAGCGGTTC
CGTTTGGCCGTGGCCGAGCACTTGTTCCCGCAGGTGGGGCAGGTGACGCTCAGCACCGGCATCGTCGAACTGACCCATGG
GCGGCTGATCAGCGAAATGCTGGACGAAGCCGACAAGGCGCTGTACTGGGCCAAGCAGAACGGCCGCAATCGCGCGGCGG
TCTATGCCGAGCTGATTGCTGGCGGGCAATTGCAGCAGGTTGCGCAACCGGTGGGCAGCGTCGACCTGTTCTAG

Upstream 100 bases:

>100_bases
TCAGCCCGAGATATGTGCCTGCGTGCCAAGCCCGGCATGACGGGTTCGTGTCCGCCCGCCGGAGGGCGCAGCCGTGACCA
ACGCACCGTTGCTGGAACGG

Downstream 100 bases:

>100_bases
AGCGTGTTATGCACGTTGAGTTGAGTGCGACGCGCCACAGGGCGCTTCCCGGAGAGTTGGCCGTCAGCGGCACGGAGCGG
GCGCCGCGCGGCTTGCCTTG

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MVDLTAIRDADLLDLSLLRTVREVCAAEELSLLRIAPDSNSIAETRLRDDGRLALTVAEIHDARTRTQLAEVHGPGDVVQ
LQEDGRALLVYPMMEARGIRTCLRVGGTRIPGLAEQAMLQGFARFFQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAG
GADSAAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERF
RLAVAEHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAELIAGGQLQQVAQPVGSVDLF

Sequences:

>Translated_317_residues
MVDLTAIRDADLLDLSLLRTVREVCAAEELSLLRIAPDSNSIAETRLRDDGRLALTVAEIHDARTRTQLAEVHGPGDVVQ
LQEDGRALLVYPMMEARGIRTCLRVGGTRIPGLAEQAMLQGFARFFQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAG
GADSAAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERF
RLAVAEHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAELIAGGQLQQVAQPVGSVDLF
>Mature_317_residues
MVDLTAIRDADLLDLSLLRTVREVCAAEELSLLRIAPDSNSIAETRLRDDGRLALTVAEIHDARTRTQLAEVHGPGDVVQ
LQEDGRALLVYPMMEARGIRTCLRVGGTRIPGLAEQAMLQGFARFFQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAG
GADSAAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERF
RLAVAEHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAELIAGGQLQQVAQPVGSVDLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=157, Percent_Identity=39.4904458598726, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=37.0967741935484, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=33.879781420765, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=32, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=183, Percent_Identity=30.6010928961749, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=167, Percent_Identity=29.940119760479, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=123, Percent_Identity=39.0243902439024, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=28.8235294117647, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=128, Percent_Identity=32.8125, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=31.9277108433735, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 35246; Mature: 35246

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00039 DEAD_ATP_HELICASE ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDLTAIRDADLLDLSLLRTVREVCAAEELSLLRIAPDSNSIAETRLRDDGRLALTVAEI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCEEEEHHHH
HDARTRTQLAEVHGPGDVVQLQEDGRALLVYPMMEARGIRTCLRVGGTRIPGLAEQAMLQ
HHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
GFARFFQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIVDIDHF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEEHHHH
KRVNDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERF
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHH
RLAVAEHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAELIA
HHHHHHHHHHHHCCEEHHHCHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCHHHHHHHHHC
GGQLQQVAQPVGSVDLF
CCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVDLTAIRDADLLDLSLLRTVREVCAAEELSLLRIAPDSNSIAETRLRDDGRLALTVAEI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCEEEEHHHH
HDARTRTQLAEVHGPGDVVQLQEDGRALLVYPMMEARGIRTCLRVGGTRIPGLAEQAMLQ
HHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
GFARFFQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIVDIDHF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEEHHHH
KRVNDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERF
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHH
RLAVAEHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAELIA
HHHHHHHHHHHHCCEEHHHCHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCHHHHHHHHHC
GGQLQQVAQPVGSVDLF
CCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]