| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is 77748527
Identifier: 77748527
GI number: 77748527
Start: 556504
End: 558258
Strand: Reverse
Name: 77748527
Synonym: XAC0466
Alternate gene names: NA
Gene position: 558258-556504 (Counterclockwise)
Preceding gene: 21241240
Following gene: 77748526
Centisome position: 10.79
GC content: 63.3
Gene sequence:
>1755_bases ATGGCAACCGATCGCGAAACTGGGCTGCTGCAGGCAGCCTATGCAGCGGGAATCACCCGGCCAAACGAATTGGCCAATTT CATGGCACAGGTAGGCCACGAATCGGGCGGACTCAATCGCCTGGAAGAAGGGTTCCGCTATACACGCGGCTCCTCGCAAG TGAGCTCGAAAGTGCGTTCTGCACTGCGCGAAGGACCGGAGGCGCTGGAAGAAGCGCGCCTGGAAGCATTGCGCGGCCAG CCTGAGAAACTCGCCGAATTGATGTATGGCGGGCGTATGGGGAACAACGAGCCCGGCGATGGTTATCTTTACCGTGGTCG CGGCTACATCCAGCTCACCGGCAAGGATCAGTATCGCGAGGCCGGCGAAGCGTTGAAACTCGACCTGGTCGCACACCCCG AACTGGCCGCGCAACCGGAAAACGCGTCGCGGATCGCAACCTGGTACTGGCAGCACAATGTGCCGCAAGCGGCCAGGCAG GATGCGCATGCAGCAGGCGTTGCGATCAACGGCGGCGATCCGCCGAATGGGCTGGCCGACCGCGAAAGCCGCTTCGCGCG CTGGCAGCGCGACCTCACGCCCGATGTGATGCACAAGCTCGAACACGGTCAACTCGGACAGACGGTCGCACCCGCGCAGC ATTCGGCACCGGCGCAAACACCGCATGCCGGTTCGAACGCGCATTCGTTCCAGGCCACCATGGAGCGCATGCTTCCGCCG CAGAGCGGCACTGCGCCGCATGTCACCGGGCATTATGGCGAGCACCGCAGCGCGCGCGACCACGGCGGCACCGACTTCAA TTATCAGGGCGGTCAGGCAGGACGCAATCTGCAGCATCCAACCGTGCATTCGCCCGTCGCCGGAACGGTGACCTTTGCCG GCGGAAGCTACGGCACCGTCAAGATTCGCGATGCACAAGGCAATTCGCACGAGATCCTGCATCTGGATGGCGTCAAGGTC AAAGAAGGGCAAACGCTGTCGGCAGGCGATGCCATCGGCACGATGGGGGGACGTGGACCCAATGGCGCAAGCCAATATGC GCAGCATGTGCATTACCAATTGCGCGATGCCAACGGCAAGTTGACCAGCCCCGAGAACTTCTGGAATCAGGGTCACCAAC ACCAAGCGGGTGCGCGGCACACCCAGGCAGCATCGGCAAGTGGCACAGGTGCCGTGCGGCATGGCGACAGCAGTCAGGAT GTGGGTAAGCTGCAGCAGGACCTCAACCGTCTGGGCGTGCGCGATGCGCAGGGCAACCGACTGGCCGAGGATGGCCGTTT CGGCGACAACACGCGTGAGGCGGTGATGGCGTTCCAGAAGCAGCATGGGCTGCAGCAGGACGGTGTTGTTGGCCGCGACA CGCGGGCAGCGTTGTCTGCGCAACCGGTGCAGACCCGCGAGGCGCAGGTTGCTGCGCCCAAAGGGCCTTCGCTCAACGAT GCATCGCACCCTGACCACGCGCTACATAACGCAATCCGCAGCAAGCTGCCGAGCATGATCTCCAACGAGACCGCGGCACA TGTCACGCTGCAGGCGAAGCAGAATGGGATCGACAGCGCGGACAAGTTGCAGAACGTGACAGTGCAGGACGGCAAGGCGT TCGTCATGGGCACCACGCCGGGCTTCCGTGCGGCGGTGGACCTGAACCAACCTGCCCCGACACTTGAGCAAACCAGCGCA CAGTTGCTGGCTGGTCAGTCGCAGCAGCAACAGGCCCAGCAAGAACAGCAGAAGGTTGCGATGGGCGGTCGCTGA
Upstream 100 bases:
>100_bases TGAGGCTGGAGCCCAGGAACAACATTAAAGGGAAGTAATGGCTTGCGCGGACAAGGATGGGTCCGTTTTTTCATGTTGCT GAGAAATGAGGAGTTACACC
Downstream 100 bases:
>100_bases TCTTTCGGCGAAAGATCAAAAGACGCCGGCCAGGACATTGGCCGGCGTTTTTGTTCCCACATGCGCTGTGGCCGGAACGG CATCATTGCGCCATCTGATC
Product: lytic enzyme
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 584; Mature: 583
Protein sequence:
>584_residues MATDRETGLLQAAYAAGITRPNELANFMAQVGHESGGLNRLEEGFRYTRGSSQVSSKVRSALREGPEALEEARLEALRGQ PEKLAELMYGGRMGNNEPGDGYLYRGRGYIQLTGKDQYREAGEALKLDLVAHPELAAQPENASRIATWYWQHNVPQAARQ DAHAAGVAINGGDPPNGLADRESRFARWQRDLTPDVMHKLEHGQLGQTVAPAQHSAPAQTPHAGSNAHSFQATMERMLPP QSGTAPHVTGHYGEHRSARDHGGTDFNYQGGQAGRNLQHPTVHSPVAGTVTFAGGSYGTVKIRDAQGNSHEILHLDGVKV KEGQTLSAGDAIGTMGGRGPNGASQYAQHVHYQLRDANGKLTSPENFWNQGHQHQAGARHTQAASASGTGAVRHGDSSQD VGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQVAAPKGPSLND ASHPDHALHNAIRSKLPSMISNETAAHVTLQAKQNGIDSADKLQNVTVQDGKAFVMGTTPGFRAAVDLNQPAPTLEQTSA QLLAGQSQQQQAQQEQQKVAMGGR
Sequences:
>Translated_584_residues MATDRETGLLQAAYAAGITRPNELANFMAQVGHESGGLNRLEEGFRYTRGSSQVSSKVRSALREGPEALEEARLEALRGQ PEKLAELMYGGRMGNNEPGDGYLYRGRGYIQLTGKDQYREAGEALKLDLVAHPELAAQPENASRIATWYWQHNVPQAARQ DAHAAGVAINGGDPPNGLADRESRFARWQRDLTPDVMHKLEHGQLGQTVAPAQHSAPAQTPHAGSNAHSFQATMERMLPP QSGTAPHVTGHYGEHRSARDHGGTDFNYQGGQAGRNLQHPTVHSPVAGTVTFAGGSYGTVKIRDAQGNSHEILHLDGVKV KEGQTLSAGDAIGTMGGRGPNGASQYAQHVHYQLRDANGKLTSPENFWNQGHQHQAGARHTQAASASGTGAVRHGDSSQD VGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQVAAPKGPSLND ASHPDHALHNAIRSKLPSMISNETAAHVTLQAKQNGIDSADKLQNVTVQDGKAFVMGTTPGFRAAVDLNQPAPTLEQTSA QLLAGQSQQQQAQQEQQKVAMGGR >Mature_583_residues ATDRETGLLQAAYAAGITRPNELANFMAQVGHESGGLNRLEEGFRYTRGSSQVSSKVRSALREGPEALEEARLEALRGQP EKLAELMYGGRMGNNEPGDGYLYRGRGYIQLTGKDQYREAGEALKLDLVAHPELAAQPENASRIATWYWQHNVPQAARQD AHAAGVAINGGDPPNGLADRESRFARWQRDLTPDVMHKLEHGQLGQTVAPAQHSAPAQTPHAGSNAHSFQATMERMLPPQ SGTAPHVTGHYGEHRSARDHGGTDFNYQGGQAGRNLQHPTVHSPVAGTVTFAGGSYGTVKIRDAQGNSHEILHLDGVKVK EGQTLSAGDAIGTMGGRGPNGASQYAQHVHYQLRDANGKLTSPENFWNQGHQHQAGARHTQAASASGTGAVRHGDSSQDV GKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQVAAPKGPSLNDA SHPDHALHNAIRSKLPSMISNETAAHVTLQAKQNGIDSADKLQNVTVQDGKAFVMGTTPGFRAAVDLNQPAPTLEQTSAQ LLAGQSQQQQAQQEQQKVAMGGR
Specific function: Unknown
COG id: COG2931
COG function: function code Q; RTX toxins and related Ca2+-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage D29 and phage L5 gp10 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000726 [H]
Pfam domain/function: PF00182 Glyco_hydro_19 [H]
EC number: NA
Molecular weight: Translated: 62536; Mature: 62404
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDRETGLLQAAYAAGITRPNELANFMAQVGHESGGLNRLEEGFRYTRGSSQVSSKVRS CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH ALREGPEALEEARLEALRGQPEKLAELMYGGRMGNNEPGDGYLYRGRGYIQLTGKDQYRE HHHHCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCHHHHH AGEALKLDLVAHPELAAQPENASRIATWYWQHNVPQAARQDAHAAGVAINGGDPPNGLAD CCCEEEEEEEECCHHHCCCCCCCEEEEEEEECCCCHHHHHCCHHCCEEECCCCCCCCCCH RESRFARWQRDLTPDVMHKLEHGQLGQTVAPAQHSAPAQTPHAGSNAHSFQATMERMLPP HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC QSGTAPHVTGHYGEHRSARDHGGTDFNYQGGQAGRNLQHPTVHSPVAGTVTFAGGSYGTV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEE KIRDAQGNSHEILHLDGVKVKEGQTLSAGDAIGTMGGRGPNGASQYAQHVHYQLRDANGK EEECCCCCCCEEEEECCEEECCCCEECCCCCHHCCCCCCCCHHHHHHHHHHHEEECCCCC LTSPENFWNQGHQHQAGARHTQAASASGTGAVRHGDSSQDVGKLQQDLNRLGVRDAQGNR CCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCC LAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQVAAPKGPSLND CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCC ASHPDHALHNAIRSKLPSMISNETAAHVTLQAKQNGIDSADKLQNVTVQDGKAFVMGTTP CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHCCCEEECCCEEEEECCC GFRAAVDLNQPAPTLEQTSAQLLAGQSQQQQAQQEQQKVAMGGR CCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATDRETGLLQAAYAAGITRPNELANFMAQVGHESGGLNRLEEGFRYTRGSSQVSSKVRS CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH ALREGPEALEEARLEALRGQPEKLAELMYGGRMGNNEPGDGYLYRGRGYIQLTGKDQYRE HHHHCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCHHHHH AGEALKLDLVAHPELAAQPENASRIATWYWQHNVPQAARQDAHAAGVAINGGDPPNGLAD CCCEEEEEEEECCHHHCCCCCCCEEEEEEEECCCCHHHHHCCHHCCEEECCCCCCCCCCH RESRFARWQRDLTPDVMHKLEHGQLGQTVAPAQHSAPAQTPHAGSNAHSFQATMERMLPP HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC QSGTAPHVTGHYGEHRSARDHGGTDFNYQGGQAGRNLQHPTVHSPVAGTVTFAGGSYGTV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEE KIRDAQGNSHEILHLDGVKVKEGQTLSAGDAIGTMGGRGPNGASQYAQHVHYQLRDANGK EEECCCCCCCEEEEECCEEECCCCEECCCCCHHCCCCCCCCHHHHHHHHHHHEEECCCCC LTSPENFWNQGHQHQAGARHTQAASASGTGAVRHGDSSQDVGKLQQDLNRLGVRDAQGNR CCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCC LAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQVAAPKGPSLND CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCC ASHPDHALHNAIRSKLPSMISNETAAHVTLQAKQNGIDSADKLQNVTVQDGKAFVMGTTP CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHCCCEEECCCEEEEECCC GFRAAVDLNQPAPTLEQTSAQLLAGQSQQQQAQQEQQKVAMGGR CCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]