| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 77747697
Identifier: 77747697
GI number: 77747697
Start: 1709580
End: 1711178
Strand: Reverse
Name: 77747697
Synonym: PD1467
Alternate gene names: NA
Gene position: 1711178-1709580 (Counterclockwise)
Preceding gene: 28199349
Following gene: 28199347
Centisome position: 67.91
GC content: 49.72
Gene sequence:
>1599_bases ATGAGTCTGCGATTTTCATCACATTGGCTTTTTTCCTTGTCAGTTGTTGCGTTGTTATTGGTAGGCTGCAAACAGGACTC CCCATCGGCTAAGCGGCAGATCATCATGGTTGAAGCTAAATTGCCGCCGCGTCCGCTCAAACCTGATCTGCCTCCGTTGT TTTTGGATATTGAGCGGCGTACGTTTCAGTTTTTTTGGGACACGACGAATGAGATGAATGGCTTGACTCCGGATCGTTAT CCGTCAAGGCCGTTTGCAAGTATTGCTTCTGTCGGGTTTGCGCTGACCGCATATCCTATCGGGATAGAAAACGGTTGGAT CAGTCGTAATCAAGCGATTGATCGTACTTTGACGACGTTGAAATTCTTGCGCGATGCTCCAATGGGGCCGCAGCGTACCG GTTGCGCTGGCTACAAGGGTTTTTTCTACCACTTCTTGGATATGCAGCATGGGCATCGCTACGACAGTTGGGTGGAGTTG TCGAGTGTGGATACTGCATTGCTGATGATGGGGGTGTTGTTCGTCGAGTCTTATTACGATGGTGAGGATGTCCGTGAGAA GGAAATCCGTCAGATTGCTGACAAGCTATACAGGCGGGTTGATTGGTTGTATTTGCAACAGCGCAAACCGCTGATTTCGA TGGGTTGGTATCCTGAGCGTGGCTTCATTGAGCATGACTGGATGGGCTACAACGAAGCGATGATGGTCTATTTGCTCGCA CTCGGTTCGCCAACTCATCCGTTGGAATCGGTCTCCTGGGATGAATGGACACGCACTTATAACAAGGATTGGGGGGTGTT TCAGGGGCAGGAGTATCTGGCTTTCGGGCCGTTGTTTGGCCATCAGTACACGCATGTCTGGGTGGATTTTCGAGATATTC AAGACCAATACATGCGTGAGCGCGGTATTGATTATTTTCTTAATAGTCGTCGTGCGGTGCTTGCTCACCGGGATTATGCA ATTGATAACCCGATGAAGTGGAAGGATTACAGTGAGAACGTTTGGGGATTGACTGCCAGCGATGGGCCGCAAAACACGAC GCAGGAATATCGCGGTGAGCAGCGTCAGTTTTTCCACTATCGCAGCCGTGGTGCTGGGCTGTTTGAGTTCTTTGATGACG GTACGATTGCACCAACTGCGATGGTGGCTTCGATCGTGTTCGCTCCGGAAGTGGTGATCCCAGCGACGCTTGAGATGCAT AAGCGTTACGGTGACTTTTTATATTCCAGTTATGGTTTTCTGGATGCGTTTAATCCGAGTTTCGATTATAAAGTTCCGCT TAAAACAGGTCGTTTGATCCCTGGCCGTGGTTGGGTGGCCAGTGATTATATCGGTATCGACCAAGGGATCATTCTTAGCA TGATTGCTAATTATCGTAATGATTTCGTCTGGAATGTGATGAAGAAGAATAAATATGTCCGTATTGGTTTGGAGCGTGCT GGTTTTACTGGTGGCTGGCTCCAAGAGGATGAGGTGTTGCGTGGGTCGCAAAAGGATGAGCGTGCGGCGGCGGTACGTTC GTTAGGGATTGCAGAGTCACATGCTCCGCCTGCGCAGACGCAGCGGGTCCCATCTTCTTTAGGTAAGAAACCGGAGTAG
Upstream 100 bases:
>100_bases GGGGGAGTGATTGGGTATGTTGGTTCCGCTCCAAATTGGGGTGGTTGCTAAGGCTGTGTTTTTTTATGTGATATGTAGGC GTTGCATATTGGTGGATTCG
Downstream 100 bases:
>100_bases TGAGTGTATTCCGGTAAATGTCTTGTTTGGTTGTTGGCTGGTTTGGTGATGGTGGCTTGTGGTCATGAGTCATCCAGGCA CACGGTGCGATTTTGGGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 532; Mature: 531
Protein sequence:
>532_residues MSLRFSSHWLFSLSVVALLLVGCKQDSPSAKRQIIMVEAKLPPRPLKPDLPPLFLDIERRTFQFFWDTTNEMNGLTPDRY PSRPFASIASVGFALTAYPIGIENGWISRNQAIDRTLTTLKFLRDAPMGPQRTGCAGYKGFFYHFLDMQHGHRYDSWVEL SSVDTALLMMGVLFVESYYDGEDVREKEIRQIADKLYRRVDWLYLQQRKPLISMGWYPERGFIEHDWMGYNEAMMVYLLA LGSPTHPLESVSWDEWTRTYNKDWGVFQGQEYLAFGPLFGHQYTHVWVDFRDIQDQYMRERGIDYFLNSRRAVLAHRDYA IDNPMKWKDYSENVWGLTASDGPQNTTQEYRGEQRQFFHYRSRGAGLFEFFDDGTIAPTAMVASIVFAPEVVIPATLEMH KRYGDFLYSSYGFLDAFNPSFDYKVPLKTGRLIPGRGWVASDYIGIDQGIILSMIANYRNDFVWNVMKKNKYVRIGLERA GFTGGWLQEDEVLRGSQKDERAAAVRSLGIAESHAPPAQTQRVPSSLGKKPE
Sequences:
>Translated_532_residues MSLRFSSHWLFSLSVVALLLVGCKQDSPSAKRQIIMVEAKLPPRPLKPDLPPLFLDIERRTFQFFWDTTNEMNGLTPDRY PSRPFASIASVGFALTAYPIGIENGWISRNQAIDRTLTTLKFLRDAPMGPQRTGCAGYKGFFYHFLDMQHGHRYDSWVEL SSVDTALLMMGVLFVESYYDGEDVREKEIRQIADKLYRRVDWLYLQQRKPLISMGWYPERGFIEHDWMGYNEAMMVYLLA LGSPTHPLESVSWDEWTRTYNKDWGVFQGQEYLAFGPLFGHQYTHVWVDFRDIQDQYMRERGIDYFLNSRRAVLAHRDYA IDNPMKWKDYSENVWGLTASDGPQNTTQEYRGEQRQFFHYRSRGAGLFEFFDDGTIAPTAMVASIVFAPEVVIPATLEMH KRYGDFLYSSYGFLDAFNPSFDYKVPLKTGRLIPGRGWVASDYIGIDQGIILSMIANYRNDFVWNVMKKNKYVRIGLERA GFTGGWLQEDEVLRGSQKDERAAAVRSLGIAESHAPPAQTQRVPSSLGKKPE >Mature_531_residues SLRFSSHWLFSLSVVALLLVGCKQDSPSAKRQIIMVEAKLPPRPLKPDLPPLFLDIERRTFQFFWDTTNEMNGLTPDRYP SRPFASIASVGFALTAYPIGIENGWISRNQAIDRTLTTLKFLRDAPMGPQRTGCAGYKGFFYHFLDMQHGHRYDSWVELS SVDTALLMMGVLFVESYYDGEDVREKEIRQIADKLYRRVDWLYLQQRKPLISMGWYPERGFIEHDWMGYNEAMMVYLLAL GSPTHPLESVSWDEWTRTYNKDWGVFQGQEYLAFGPLFGHQYTHVWVDFRDIQDQYMRERGIDYFLNSRRAVLAHRDYAI DNPMKWKDYSENVWGLTASDGPQNTTQEYRGEQRQFFHYRSRGAGLFEFFDDGTIAPTAMVASIVFAPEVVIPATLEMHK RYGDFLYSSYGFLDAFNPSFDYKVPLKTGRLIPGRGWVASDYIGIDQGIILSMIANYRNDFVWNVMKKNKYVRIGLERAG FTGGWLQEDEVLRGSQKDERAAAVRSLGIAESHAPPAQTQRVPSSLGKKPE
Specific function: Unknown
COG id: COG5368
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61444; Mature: 61313
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRFSSHWLFSLSVVALLLVGCKQDSPSAKRQIIMVEAKLPPRPLKPDLPPLFLDIERR CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC TFQFFWDTTNEMNGLTPDRYPSRPFASIASVGFALTAYPIGIENGWISRNQAIDRTLTTL EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHH KFLRDAPMGPQRTGCAGYKGFFYHFLDMQHGHRYDSWVELSSVDTALLMMGVLFVESYYD HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCC GEDVREKEIRQIADKLYRRVDWLYLQQRKPLISMGWYPERGFIEHDWMGYNEAMMVYLLA CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH LGSPTHPLESVSWDEWTRTYNKDWGVFQGQEYLAFGPLFGHQYTHVWVDFRDIQDQYMRE CCCCCCCCCCCCHHHHHHHHCCCCCEECCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHH RGIDYFLNSRRAVLAHRDYAIDNPMKWKDYSENVWGLTASDGPQNTTQEYRGEQRQFFHY CCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHH RSRGAGLFEFFDDGTIAPTAMVASIVFAPEVVIPATLEMHKRYGDFLYSSYGFLDAFNPS HHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCC FDYKVPLKTGRLIPGRGWVASDYIGIDQGIILSMIANYRNDFVWNVMKKNKYVRIGLERA CCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHEEEHHHCCCEEEEEEECC GFTGGWLQEDEVLRGSQKDERAAAVRSLGIAESHAPPAQTQRVPSSLGKKPE CCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCHHHHCCCCC >Mature Secondary Structure SLRFSSHWLFSLSVVALLLVGCKQDSPSAKRQIIMVEAKLPPRPLKPDLPPLFLDIERR CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC TFQFFWDTTNEMNGLTPDRYPSRPFASIASVGFALTAYPIGIENGWISRNQAIDRTLTTL EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHH KFLRDAPMGPQRTGCAGYKGFFYHFLDMQHGHRYDSWVELSSVDTALLMMGVLFVESYYD HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCC GEDVREKEIRQIADKLYRRVDWLYLQQRKPLISMGWYPERGFIEHDWMGYNEAMMVYLLA CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH LGSPTHPLESVSWDEWTRTYNKDWGVFQGQEYLAFGPLFGHQYTHVWVDFRDIQDQYMRE CCCCCCCCCCCCHHHHHHHHCCCCCEECCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHH RGIDYFLNSRRAVLAHRDYAIDNPMKWKDYSENVWGLTASDGPQNTTQEYRGEQRQFFHY CCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHH RSRGAGLFEFFDDGTIAPTAMVASIVFAPEVVIPATLEMHKRYGDFLYSSYGFLDAFNPS HHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCC FDYKVPLKTGRLIPGRGWVASDYIGIDQGIILSMIANYRNDFVWNVMKKNKYVRIGLERA CCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHEEEHHHCCCEEEEEEECC GFTGGWLQEDEVLRGSQKDERAAAVRSLGIAESHAPPAQTQRVPSSLGKKPE CCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA