| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 77747674
Identifier: 77747674
GI number: 77747674
Start: 1168479
End: 1170368
Strand: Reverse
Name: 77747674
Synonym: PD0969
Alternate gene names: NA
Gene position: 1170368-1168479 (Counterclockwise)
Preceding gene: 28198869
Following gene: 28198865
Centisome position: 46.45
GC content: 62.38
Gene sequence:
>1890_bases ATGATTCTCGACGAATTCCTGATCCGCCTTGGCGCGGTCGCTGACACCTCAGGCTTCAACACCTTTAGCACCGGCCTGAC CCGCGTTACGGGCCTCGTGACGGTGGCCGCCGCCGCCATGGGCGGGGCGCTGGCGGGAATGAATCGCTTTGTCGGCAGCG CCTTAAGCGAACTCAATGCCCTCAACAGTGCCAGCCAGCGCACCGGAGCCAGCCTGTCCTTGCTCCAGGAGCTGGGCTAT GCGGCGCGTTTGAATGGCTCCTCTGTGGAGGCCTCGACCCGTTCTATTGAATCCTTGTCCCAAAAAATAGGCGAAGCCGC CAATGGAGTGGGGCGCGGGGCCATGCTGTTCCAAAAGCTGGGCTTGCAGGCCCGACAGGCCGATGGCTCCGTTAAATCCG TTGGCGACATGCTGGGCGATGTGCAAGAAAAAATCCGTGGCTTGTCGGCACCACAACAGCAGTCCATCCTGGCCAACCTG GGCATGGATGCCACGATGCTGCAAACCCTGCGCCTGAGTCGTGAGGAGTTAAACGGCGTCTTCCAAGAGGCACACGATCT AGGCGTCATCACCGCGGATGGTGCCGATACCGCGCTGGAGTATGGCGATGCGATGGAACGCCTGCGCGTGGTGCTGGGGG CGTTACGGACCAACATCGCCATTGGGGTGGCCCCGGCCTTCACCCGGCTGATTGAGCACTCCAAACACTGGTTGATCGCC AATAAAGAGCAACTGCGTGATGGCATCGGCAAAGTCGTCAAGATCCTCATTGCAGCGGGCACCGCCGTATGGAACGTCAT CCGTGCCGTGAACAGCGCGGTGAATCAGACCATTGGCTGGAAAGCGGTGCTGCTGGCCGTGGGCGCGGTGCTGGCCCGGG CCTTTGCACTGAACCCGGTCACCTGGCTGATTGCGGGGATTGTGGCCCTAGTGGCGTTGGTCGATGACTTCATAACCTAC CTGGACGGCGGAGAGTCCTTGCTGGGGGCCTTCTGGGGTCCGCTGATCACCTATGCCAAGCGCGCCAAGGCTGTGATTGC AGACCTCACGCCCGCACTGAAAGCCCTTGGCGTCCTCTTAGCGGGACTGGCCATCGGTCACGTGGTGAGCAACATCGGCC GCCTAGTGGGCGCAGGCCGCACTCTGGCAATGTGGCTGGCTGGGCCGTTGGTGAAAGCGCTCCAGGTCGCCGCGCTGGCG TTGCGTGCCGCCTTCCTCTCCAACCCCATTGGATTAGTGATTGCAAGCGTGGCCCTGCTGGCGTATGCGATCTATACGCA TTTTGACAAGATCAAGCACGCGGTGGGGACGGCCTGGCAGTGGTGCACCCGTACCGCCAATGCTGCCTTTGGGTCCATCC AACACACGCTGCAAGAGGCTGCCGCCGCCGCCAAGACCACCTGGGCCAGCATCAAGGACGCCTGTGCGCTGGCCTTTAGC CACAGCATCGCCACCGCCGATAGTGCCGTAAACCGCTTGCGGGCCGTGTTCAGCGCCATGGGCAGCAGTATCAGCACCGC CCTGACCAGCGCCTTCGACACCATCATGACGCTATGGGACCGTACCGTCGGGCGTATCGCCCAGGGGGCCGAGCGGATCA AAGGCTTTTTCCGAGCGATTGCTCCAACACTGAAGCAGGCCGGTCGTGACACCCAAGACGTGGCGCAGCGCGTCAATGCA CAGGTGCAGGCCGCCCAGACGACAGCTCGCCACGCCGCTGCTCAGGCCGCCACGCCCGCCCGTTCCCAGGCCAATGTGCA TTCCCAACAGGAAGTAAAGATCGATATCCACACCGCCGACCCGATCTTGGCCGGTCGTCAAGCCGCCGCCGACATCAACA GACACCACCAAATGGCGCTGCGCAATACCGGTAGTGCTGTGGCGTTTTGA
Upstream 100 bases:
>100_bases GAACAACTGCGCACCGTGTACTGCCTCAGTGACTTATGTACCTTCCACACCGCGATGGTGGAATGGGATGCCCTCCAGCA TGACGCGCTAACCCCCTGCG
Downstream 100 bases:
>100_bases TCCGCCCAGCCTATCGGTAAATCTCACCCCGGTGACCAACACGTTCTGTTTTTGATTTTTATGCCGCTTCTAATTTCACA TGAACGCGCCGTCCGATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Lytic Transglycosylase Catalytic; Tail Tape Measure Core Region
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MILDEFLIRLGAVADTSGFNTFSTGLTRVTGLVTVAAAAMGGALAGMNRFVGSALSELNALNSASQRTGASLSLLQELGY AARLNGSSVEASTRSIESLSQKIGEAANGVGRGAMLFQKLGLQARQADGSVKSVGDMLGDVQEKIRGLSAPQQQSILANL GMDATMLQTLRLSREELNGVFQEAHDLGVITADGADTALEYGDAMERLRVVLGALRTNIAIGVAPAFTRLIEHSKHWLIA NKEQLRDGIGKVVKILIAAGTAVWNVIRAVNSAVNQTIGWKAVLLAVGAVLARAFALNPVTWLIAGIVALVALVDDFITY LDGGESLLGAFWGPLITYAKRAKAVIADLTPALKALGVLLAGLAIGHVVSNIGRLVGAGRTLAMWLAGPLVKALQVAALA LRAAFLSNPIGLVIASVALLAYAIYTHFDKIKHAVGTAWQWCTRTANAAFGSIQHTLQEAAAAAKTTWASIKDACALAFS HSIATADSAVNRLRAVFSAMGSSISTALTSAFDTIMTLWDRTVGRIAQGAERIKGFFRAIAPTLKQAGRDTQDVAQRVNA QVQAAQTTARHAAAQAATPARSQANVHSQQEVKIDIHTADPILAGRQAAADINRHHQMALRNTGSAVAF
Sequences:
>Translated_629_residues MILDEFLIRLGAVADTSGFNTFSTGLTRVTGLVTVAAAAMGGALAGMNRFVGSALSELNALNSASQRTGASLSLLQELGY AARLNGSSVEASTRSIESLSQKIGEAANGVGRGAMLFQKLGLQARQADGSVKSVGDMLGDVQEKIRGLSAPQQQSILANL GMDATMLQTLRLSREELNGVFQEAHDLGVITADGADTALEYGDAMERLRVVLGALRTNIAIGVAPAFTRLIEHSKHWLIA NKEQLRDGIGKVVKILIAAGTAVWNVIRAVNSAVNQTIGWKAVLLAVGAVLARAFALNPVTWLIAGIVALVALVDDFITY LDGGESLLGAFWGPLITYAKRAKAVIADLTPALKALGVLLAGLAIGHVVSNIGRLVGAGRTLAMWLAGPLVKALQVAALA LRAAFLSNPIGLVIASVALLAYAIYTHFDKIKHAVGTAWQWCTRTANAAFGSIQHTLQEAAAAAKTTWASIKDACALAFS HSIATADSAVNRLRAVFSAMGSSISTALTSAFDTIMTLWDRTVGRIAQGAERIKGFFRAIAPTLKQAGRDTQDVAQRVNA QVQAAQTTARHAAAQAATPARSQANVHSQQEVKIDIHTADPILAGRQAAADINRHHQMALRNTGSAVAF >Mature_629_residues MILDEFLIRLGAVADTSGFNTFSTGLTRVTGLVTVAAAAMGGALAGMNRFVGSALSELNALNSASQRTGASLSLLQELGY AARLNGSSVEASTRSIESLSQKIGEAANGVGRGAMLFQKLGLQARQADGSVKSVGDMLGDVQEKIRGLSAPQQQSILANL GMDATMLQTLRLSREELNGVFQEAHDLGVITADGADTALEYGDAMERLRVVLGALRTNIAIGVAPAFTRLIEHSKHWLIA NKEQLRDGIGKVVKILIAAGTAVWNVIRAVNSAVNQTIGWKAVLLAVGAVLARAFALNPVTWLIAGIVALVALVDDFITY LDGGESLLGAFWGPLITYAKRAKAVIADLTPALKALGVLLAGLAIGHVVSNIGRLVGAGRTLAMWLAGPLVKALQVAALA LRAAFLSNPIGLVIASVALLAYAIYTHFDKIKHAVGTAWQWCTRTANAAFGSIQHTLQEAAAAAKTTWASIKDACALAFS HSIATADSAVNRLRAVFSAMGSSISTALTSAFDTIMTLWDRTVGRIAQGAERIKGFFRAIAPTLKQAGRDTQDVAQRVNA QVQAAQTTARHAAAQAATPARSQANVHSQQEVKIDIHTADPILAGRQAAADINRHHQMALRNTGSAVAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65877; Mature: 65877
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILDEFLIRLGAVADTSGFNTFSTGLTRVTGLVTVAAAAMGGALAGMNRFVGSALSELNA CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNSASQRTGASLSLLQELGYAARLNGSSVEASTRSIESLSQKIGEAANGVGRGAMLFQKL HHHHHHHCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GLQARQADGSVKSVGDMLGDVQEKIRGLSAPQQQSILANLGMDATMLQTLRLSREELNGV CCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH FQEAHDLGVITADGADTALEYGDAMERLRVVLGALRTNIAIGVAPAFTRLIEHSKHWLIA HHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE NKEQLRDGIGKVVKILIAAGTAVWNVIRAVNSAVNQTIGWKAVLLAVGAVLARAFALNPV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHH TWLIAGIVALVALVDDFITYLDGGESLLGAFWGPLITYAKRAKAVIADLTPALKALGVLL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLAIGHVVSNIGRLVGAGRTLAMWLAGPLVKALQVAALALRAAFLSNPIGLVIASVALL HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AYAIYTHFDKIKHAVGTAWQWCTRTANAAFGSIQHTLQEAAAAAKTTWASIKDACALAFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSIATADSAVNRLRAVFSAMGSSISTALTSAFDTIMTLWDRTVGRIAQGAERIKGFFRAI HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APTLKQAGRDTQDVAQRVNAQVQAAQTTARHAAAQAATPARSQANVHSQQEVKIDIHTAD HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEECC PILAGRQAAADINRHHQMALRNTGSAVAF CHHHCHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MILDEFLIRLGAVADTSGFNTFSTGLTRVTGLVTVAAAAMGGALAGMNRFVGSALSELNA CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNSASQRTGASLSLLQELGYAARLNGSSVEASTRSIESLSQKIGEAANGVGRGAMLFQKL HHHHHHHCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GLQARQADGSVKSVGDMLGDVQEKIRGLSAPQQQSILANLGMDATMLQTLRLSREELNGV CCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH FQEAHDLGVITADGADTALEYGDAMERLRVVLGALRTNIAIGVAPAFTRLIEHSKHWLIA HHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE NKEQLRDGIGKVVKILIAAGTAVWNVIRAVNSAVNQTIGWKAVLLAVGAVLARAFALNPV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHH TWLIAGIVALVALVDDFITYLDGGESLLGAFWGPLITYAKRAKAVIADLTPALKALGVLL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLAIGHVVSNIGRLVGAGRTLAMWLAGPLVKALQVAALALRAAFLSNPIGLVIASVALL HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AYAIYTHFDKIKHAVGTAWQWCTRTANAAFGSIQHTLQEAAAAAKTTWASIKDACALAFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSIATADSAVNRLRAVFSAMGSSISTALTSAFDTIMTLWDRTVGRIAQGAERIKGFFRAI HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APTLKQAGRDTQDVAQRVNAQVQAAQTTARHAAAQAATPARSQANVHSQQEVKIDIHTAD HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEECC PILAGRQAAADINRHHQMALRNTGSAVAF CHHHCHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA