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The map label for this gene is intD [H]

Identifier: 77465807

GI number: 77465807

Start: 922803

End: 923801

Strand: Direct

Name: intD [H]

Synonym: RSP_3805

Alternate gene names: 77465807

Gene position: 922803-923801 (Clockwise)

Preceding gene: 77465806

Following gene: 77465813

Centisome position: 97.86

GC content: 68.37

Gene sequence:

>999_bases
ATGCGCGAGTATCGGATCGGCCGCCTCAACGGGCGGTTCGTCGTCTCATGGTGGGAGGATGGAGCCCGAAGGCGCTATCG
TCTTGACGCACGCACGCGAGCGGAAGCCGAGGTCGAGGCGCTAGACCGGATCCGCAGGGAGACCCTGCCCTCCGGGGCGA
CGACCGTCCGAGACCTGTGGGCGGCCTATCTTGCCGATCGCAAGGGCCGCCCGGTCGAGCGCAACATGCGGTCCAGCGGC
AACGCGGTCCTGCCGCATTTCGGCGCGCTGCGGCCCGATCAGATCACGCCGGAAGCCTGCCGGAGCTACACCAAGGCACG
GCGCAAGACGGTCTCCGTCGGCACCGTCTGGACGGAGCTCGGCCACCTGAGGACATGCCTGCTCTGGGCGGCCAAGCGCG
GCCTGATCCAGGTGGCGCCGCACATCGAGAGGCCAGCCAAGCCGGCGCCGCGCGACCGCTATCTGACGCACGCCGAGGTT
TCGAGGCTGATGGAGGCCGAGTGCGAGCCCCACATCAAGCTGGCGATCACCGTCCTGCTGACGACGGCGGCTCGCGTCGG
TGCGGTGCTGGAGCTGACATGGGATCGGGTTGACCTCGAGCGTGGGCAGATCCGGCTGCGGGTGGAAGCCGAGGGGCCGC
GGAAAGGCCGGGCGACGGTGCCGATCAACAACACACTCCGCGCCGCGCTGACATCCGCCCGCGCGGCCGCGCTGTCTGAT
CATGTGATCGAGTGGGCGGGCGGGCCGGTCAAGTGCATCCGCAAGGGCTTCCTGCGGGCGGTTTCCAATGCCGGCCTGTT
GGACGTGACGCTGCACACCTTGCGCCACACGGCCGCGGTCCACATGGCCGAGGCCGGCGTGCCCATGGACGAGATCAGCC
AATATCTCGGCCACTCGAACGTGCAGATCACCTCCAGCGTCTATGCGCGATTCTCTCCGCAGCATCTACGGAAGGCCGCG
GATGCGCTGGAATTCGGGGCTCTGCGGGTCGTGAAATGA

Upstream 100 bases:

>100_bases
CGGCCGAGACCGTGCGCCAGCTGGTCAAGTCCGGCCGCTTGTCCGGGTTCAGGGTGGGACGCATGATCCGAATCCCAGCA
CGATCAGTGGAGGACTACGA

Downstream 100 bases:

>100_bases
CCGCGCGTAGGTTCAATGAACCCGAGCGCGTCTCGCACTTCCAGAAAAAACCGTGTGTTTTCATGGTGGGTGGTGAGGGG
CTCGAACCCCCGACATCCTC

Product: integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MREYRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPSGATTVRDLWAAYLADRKGRPVERNMRSSG
NAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEV
SRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAAALSD
HVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAA
DALEFGALRVVK

Sequences:

>Translated_332_residues
MREYRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPSGATTVRDLWAAYLADRKGRPVERNMRSSG
NAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEV
SRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAAALSD
HVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAA
DALEFGALRVVK
>Mature_332_residues
MREYRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPSGATTVRDLWAAYLADRKGRPVERNMRSSG
NAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEV
SRLMEAECEPHIKLAITVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAAALSD
HVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAA
DALEFGALRVVK

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=243, Percent_Identity=26.7489711934156, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37115; Mature: 37115

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREYRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPSGATTVRDLW
CCCCEEEECCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AAYLADRKGRPVERNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTEL
HHHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHEEEHHHHHHHH
GHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLL
HHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
TTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAAALSD
HHHHHHCEEEEEEHHHHCCCCCEEEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHH
HVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSN
HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
VQITSSVYARFSPQHLRKAADALEFGALRVVK
EEEHHHHHHCCCHHHHHHHHHHHHHCCEEECC
>Mature Secondary Structure
MREYRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPSGATTVRDLW
CCCCEEEECCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AAYLADRKGRPVERNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTEL
HHHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHEEEHHHHHHHH
GHLRTCLLWAAKRGLIQVAPHIERPAKPAPRDRYLTHAEVSRLMEAECEPHIKLAITVLL
HHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
TTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAAALSD
HHHHHHCEEEEEEHHHHCCCCCEEEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHH
HVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSN
HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
VQITSSVYARFSPQHLRKAADALEFGALRVVK
EEEHHHHHHCCCHHHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]