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The map label for this gene is rbsC [H]

Identifier: 77465740

GI number: 77465740

Start: 860324

End: 861301

Strand: Direct

Name: rbsC [H]

Synonym: RSP_3734

Alternate gene names: 77465740

Gene position: 860324-861301 (Clockwise)

Preceding gene: 77465739

Following gene: 77465741

Centisome position: 91.23

GC content: 65.03

Gene sequence:

>978_bases
ATGAAGATCCTGCATTCCACCGAATTCGTGATCGCCCTCGTGCTTCTGGCCGCGATGGTGCTGATCGGTCTCGTGAACCC
GGCCTTCTGGGGGCTGGACAACCTCTTCAGCCTGGCGAAATCGAACGTCGTCATCGGCATCATGGCCCTGGGCGTGCTGC
TCGTGATGATCTCGGGCGGCATCGACGTGTCGTTTCCGGCCATCGCGGTGGCGGCGCTCTATATCGTCGTGCGCGCCATG
GTCGAGCTGAACTACGACGGGGTGTTCATTCCCTTCCTCGCCGCGGCCGCGATCGGACTCGTGCTCGGAGGCTTCAACGC
CTTCATCATCGAGCGCTTCCGGATGATCCCGCTGATCGTGACGCTCGGCACCGCCTCGATCGTGCGCGGACTCGTGCTGG
GGCTTCTGGGCAGCTCCATCGTCAATATCAACAAGATGCCGAAGGAGCTGATCGAGTTCGGCCGCCACGACCTGATGACG
GTCGAGGCCGCGAACGGGGCGACCTACGGGCTGACCTCGATGGTGCTGGTCTATCTCGGCATCGCGCTCGTCATGCATCT
GGTGCTGCGGCACACGATGATCGGCCGCTCGGTCTATGCCTACGGCACGGATGCGGAATCGGCGCGCCGGGCGGGCTTCA
ACACCCGCCGGACGATCTGGTTCGTCTATTGCCTCGCGGGGCTGCTCGCGGGCTTTGCCGGGATGCTCCACACCTCGATG
ATCTGGCAGGCCAACCCGCGCGATTTCCAGGGGCTCGAGCTCGACGTGATCGCGGCCGTGGTGCTGGGCGGCGCCTCGAT
CTTCGGCGGCCGCGGCTCGGTCGCGGGCACGCTGATCGGGGTGTTCATGCTGGTGATGGTCAAGAACTCGCTGATCCTGC
TGAAGGTGGACACGACCTGGCAGCGGGTGGTCGTGGGCCTCATCATCGTCGCCGCGACCGCCATCACCGCCTGGCGCGAC
CGCAAGAAGCTGGCCTGA

Upstream 100 bases:

>100_bases
ACGTCATGCACCGTGGACGCTTCGTCGCCGATCTGGACGGGTCCGGGATGACCGAGGACCGGATCAACGATGCCCTCAAG
ACCTTGAACTGAGCGGTCCG

Downstream 100 bases:

>100_bases
GGGGGGAACGCCATGGCCTCGAACACCGAAACCCGCCCCCTGCTGAGCCGCCTTCTCGGGCGCGATGCGGCGGTGGCGCA
GCTCATCGTCATCACGCTGC

Product: ABC sugar transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKILHSTEFVIALVLLAAMVLIGLVNPAFWGLDNLFSLAKSNVVIGIMALGVLLVMISGGIDVSFPAIAVAALYIVVRAM
VELNYDGVFIPFLAAAAIGLVLGGFNAFIIERFRMIPLIVTLGTASIVRGLVLGLLGSSIVNINKMPKELIEFGRHDLMT
VEAANGATYGLTSMVLVYLGIALVMHLVLRHTMIGRSVYAYGTDAESARRAGFNTRRTIWFVYCLAGLLAGFAGMLHTSM
IWQANPRDFQGLELDVIAAVVLGGASIFGGRGSVAGTLIGVFMLVMVKNSLILLKVDTTWQRVVVGLIIVAATAITAWRD
RKKLA

Sequences:

>Translated_325_residues
MKILHSTEFVIALVLLAAMVLIGLVNPAFWGLDNLFSLAKSNVVIGIMALGVLLVMISGGIDVSFPAIAVAALYIVVRAM
VELNYDGVFIPFLAAAAIGLVLGGFNAFIIERFRMIPLIVTLGTASIVRGLVLGLLGSSIVNINKMPKELIEFGRHDLMT
VEAANGATYGLTSMVLVYLGIALVMHLVLRHTMIGRSVYAYGTDAESARRAGFNTRRTIWFVYCLAGLLAGFAGMLHTSM
IWQANPRDFQGLELDVIAAVVLGGASIFGGRGSVAGTLIGVFMLVMVKNSLILLKVDTTWQRVVVGLIIVAATAITAWRD
RKKLA
>Mature_325_residues
MKILHSTEFVIALVLLAAMVLIGLVNPAFWGLDNLFSLAKSNVVIGIMALGVLLVMISGGIDVSFPAIAVAALYIVVRAM
VELNYDGVFIPFLAAAAIGLVLGGFNAFIIERFRMIPLIVTLGTASIVRGLVLGLLGSSIVNINKMPKELIEFGRHDLMT
VEAANGATYGLTSMVLVYLGIALVMHLVLRHTMIGRSVYAYGTDAESARRAGFNTRRTIWFVYCLAGLLAGFAGMLHTSM
IWQANPRDFQGLELDVIAAVVLGGASIFGGRGSVAGTLIGVFMLVMVKNSLILLKVDTTWQRVVVGLIIVAATAITAWRD
RKKLA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=302, Percent_Identity=32.1192052980132, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790191, Length=317, Percent_Identity=32.807570977918, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=28.6624203821656, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790524, Length=317, Percent_Identity=28.7066246056782, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787794, Length=333, Percent_Identity=28.2282282282282, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=36.8421052631579, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87082395, Length=310, Percent_Identity=26.4516129032258, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=28.3737024221453, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788471, Length=335, Percent_Identity=29.5522388059701, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693214, Length=230, Percent_Identity=29.1304347826087, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34780; Mature: 34780

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILHSTEFVIALVLLAAMVLIGLVNPAFWGLDNLFSLAKSNVVIGIMALGVLLVMISGG
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDVSFPAIAVAALYIVVRAMVELNYDGVFIPFLAAAAIGLVLGGFNAFIIERFRMIPLIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTASIVRGLVLGLLGSSIVNINKMPKELIEFGRHDLMTVEAANGATYGLTSMVLVYLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHH
IALVMHLVLRHTMIGRSVYAYGTDAESARRAGFNTRRTIWFVYCLAGLLAGFAGMLHTSM
HHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IWQANPRDFQGLELDVIAAVVLGGASIFGGRGSVAGTLIGVFMLVMVKNSLILLKVDTTW
HCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHH
QRVVVGLIIVAATAITAWRDRKKLA
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKILHSTEFVIALVLLAAMVLIGLVNPAFWGLDNLFSLAKSNVVIGIMALGVLLVMISGG
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDVSFPAIAVAALYIVVRAMVELNYDGVFIPFLAAAAIGLVLGGFNAFIIERFRMIPLIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTASIVRGLVLGLLGSSIVNINKMPKELIEFGRHDLMTVEAANGATYGLTSMVLVYLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHH
IALVMHLVLRHTMIGRSVYAYGTDAESARRAGFNTRRTIWFVYCLAGLLAGFAGMLHTSM
HHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IWQANPRDFQGLELDVIAAVVLGGASIFGGRGSVAGTLIGVFMLVMVKNSLILLKVDTTW
HCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHH
QRVVVGLIIVAATAITAWRDRKKLA
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]