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The map label for this gene is ycjR [C]

Identifier: 77465678

GI number: 77465678

Start: 790167

End: 791054

Strand: Reverse

Name: ycjR [C]

Synonym: RSP_3671

Alternate gene names: 77465678

Gene position: 791054-790167 (Counterclockwise)

Preceding gene: 77465679

Following gene: 77465677

Centisome position: 83.89

GC content: 70.72

Gene sequence:

>888_bases
GTGAAAAATCCTGTCGGCATCATCTCGATGCAGTTCATCCGGCCCTTCACCTCGGAGTCGCTGCATTTCCTGAAGAAGTC
CCGGGCCCTGGGCTTCGATTTCATCGAGCTTCTCGTGCCCGAGCCCGAAGACGGGCTCGACGCGGCCGAGGTGCGGCGCA
TCTGCGAGGGCGAGGGGCTGGGCCTCGTTCTGGCCGCGCGCGTGAACCTCCAGCGCTCGATCGCGAGCGAGGAGCCTGCG
GCGCGGGCCGGCGGGCGCGACTATCTGAAATATTGCATCGAGGCCGCCGAGGCGCTCGGCGCGACCATCGTCGGCGGCCC
GCTCTATGGCGAGCCGCTGGTCTTCGCCGGCCGCCCGCCCTTCCCCTGGACGGCCGAACAGATCGCCGCCCGCGCCGCCC
GCACCGTCGAGGGGCTGGCCGAAGTGGCCCCGCTCGCCGCGAGCGCGGGCAAGGTCTTCGGGCTCGAGCCGCTGAACCGC
TTCGAGACCGACATCGTGAACACGACCGCACAGGCCATCGAGGTGGTGGATGCGGTGGGCTCGCCCGGTCTCGGCGTCAT
GCTCGACACGTTCCACATGAACATGGAGGAACGCTCGATCCCCGATGCGATCCGCGCCACAGGCGCGCGCCTCGTCCATT
TTCAGGCCAACGAGAACCACCGCGGCTTCCCCGGCACCGGCACCATGGACTGGACGGCCATCGCGCGGGCGCTGGGGCAG
GCGGGCTACGCGGGTCCGGTCTCGCTCGAGCCCTTCCGGCGCGACGACGAGCGCGTGGCGCTGCCCATCGCCCACTGGCG
CGCCCCGCACGAGGACGAGGACGAGAAGCTGCGCGCGGGGCTGGGCCTCATCCGCTCCGCGCTCACCCTGGCGGAGGTGA
CCCACTGA

Upstream 100 bases:

>100_bases
AGCGGCGCCTCGTGGGCGGCCTGACTCAGGGCGCCGTGAAGGGCTGATCCCAGACCCGGCGGGGCCGGAGAGGGCCCCGC
CTTCCCAAGAAGGAAGAAAC

Downstream 100 bases:

>100_bases
TGACGATCAGGATCGGATGGATCGGCTGCGGCCGCCACGCAACCTGGATGCTGATGCCGCAGCTCGCCCGTTCGGGCTTC
GAGATCGCGGCGGTCTGCGA

Product: putative D-tagatose 3-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKNPVGIISMQFIRPFTSESLHFLKKSRALGFDFIELLVPEPEDGLDAAEVRRICEGEGLGLVLAARVNLQRSIASEEPA
ARAGGRDYLKYCIEAAEALGATIVGGPLYGEPLVFAGRPPFPWTAEQIAARAARTVEGLAEVAPLAASAGKVFGLEPLNR
FETDIVNTTAQAIEVVDAVGSPGLGVMLDTFHMNMEERSIPDAIRATGARLVHFQANENHRGFPGTGTMDWTAIARALGQ
AGYAGPVSLEPFRRDDERVALPIAHWRAPHEDEDEKLRAGLGLIRSALTLAEVTH

Sequences:

>Translated_295_residues
MKNPVGIISMQFIRPFTSESLHFLKKSRALGFDFIELLVPEPEDGLDAAEVRRICEGEGLGLVLAARVNLQRSIASEEPA
ARAGGRDYLKYCIEAAEALGATIVGGPLYGEPLVFAGRPPFPWTAEQIAARAARTVEGLAEVAPLAASAGKVFGLEPLNR
FETDIVNTTAQAIEVVDAVGSPGLGVMLDTFHMNMEERSIPDAIRATGARLVHFQANENHRGFPGTGTMDWTAIARALGQ
AGYAGPVSLEPFRRDDERVALPIAHWRAPHEDEDEKLRAGLGLIRSALTLAEVTH
>Mature_295_residues
MKNPVGIISMQFIRPFTSESLHFLKKSRALGFDFIELLVPEPEDGLDAAEVRRICEGEGLGLVLAARVNLQRSIASEEPA
ARAGGRDYLKYCIEAAEALGATIVGGPLYGEPLVFAGRPPFPWTAEQIAARAARTVEGLAEVAPLAASAGKVFGLEPLNR
FETDIVNTTAQAIEVVDAVGSPGLGVMLDTFHMNMEERSIPDAIRATGARLVHFQANENHRGFPGTGTMDWTAIARALGQ
AGYAGPVSLEPFRRDDERVALPIAHWRAPHEDEDEKLRAGLGLIRSALTLAEVTH

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=170, Percent_Identity=30, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786718, Length=238, Percent_Identity=25.6302521008403, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 31785; Mature: 31785

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPVGIISMQFIRPFTSESLHFLKKSRALGFDFIELLVPEPEDGLDAAEVRRICEGEGL
CCCCCCEEEHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
GLVLAARVNLQRSIASEEPAARAGGRDYLKYCIEAAEALGATIVGGPLYGEPLVFAGRPP
CEEEEEHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCEEECCCCCCCCEEECCCCC
FPWTAEQIAARAARTVEGLAEVAPLAASAGKVFGLEPLNRFETDIVNTTAQAIEVVDAVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCC
SPGLGVMLDTFHMNMEERSIPDAIRATGARLVHFQANENHRGFPGTGTMDWTAIARALGQ
CCCCEEEEHHHHCCCHHHCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
AGYAGPVSLEPFRRDDERVALPIAHWRAPHEDEDEKLRAGLGLIRSALTLAEVTH
CCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNPVGIISMQFIRPFTSESLHFLKKSRALGFDFIELLVPEPEDGLDAAEVRRICEGEGL
CCCCCCEEEHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
GLVLAARVNLQRSIASEEPAARAGGRDYLKYCIEAAEALGATIVGGPLYGEPLVFAGRPP
CEEEEEHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCEEECCCCCCCCEEECCCCC
FPWTAEQIAARAARTVEGLAEVAPLAASAGKVFGLEPLNRFETDIVNTTAQAIEVVDAVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCC
SPGLGVMLDTFHMNMEERSIPDAIRATGARLVHFQANENHRGFPGTGTMDWTAIARALGQ
CCCCEEEEHHHHCCCHHHCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
AGYAGPVSLEPFRRDDERVALPIAHWRAPHEDEDEKLRAGLGLIRSALTLAEVTH
CCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA