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The map label for this gene is ihfB [H]

Identifier: 77465590

GI number: 77465590

Start: 681250

End: 681531

Strand: Reverse

Name: ihfB [H]

Synonym: RSP_3589

Alternate gene names: 77465590

Gene position: 681531-681250 (Counterclockwise)

Preceding gene: 77465591

Following gene: 77465589

Centisome position: 72.27

GC content: 59.22

Gene sequence:

>282_bases
ATGATCCGATCGGAACTGATCCAGAAAATAGCCGACGAGAATCCTCACCTCACCCAGCGCCATGTCGAGCGGATCGTGAA
CACGGTCTTCGAGGAGATCATCGAGGCTCTGGCCCGTGGCGACCGGGTGGAGCTGCGCGGATTCGGCGCATTCTCGGTCA
AGGCCCGGGATGCCAGAGTCGGCCGCAACCCGAGAACGGGTGAAGCTGTCGAAGTCGAAGACAAGAAGGTTCCCTTCTTC
AAAACCGGCAAGCTGCTGCGTGATCGCCTGAATGCGAAGTGA

Upstream 100 bases:

>100_bases
GTGTCCCTTATTCCACGGTTTTCCAGTTTGTGCGGCGCAGATTTTTCCTCTATCCTTCCTTGGCATAAGCGTCCGCCGAA
GGCGGCTCAGGGGGGCAAGG

Downstream 100 bases:

>100_bases
CGGCGCGGCATTGCCCCTCTGATTGGTGAGCAGGACCCCTATGATCCGTTGGTTGCGTATTCTGTTCCTCGTCGTCCTGG
CGGTCGTGCTCCTGACCGTC

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARVGRNPRTGEAVEVEDKKVPFF
KTGKLLRDRLNAK

Sequences:

>Translated_93_residues
MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARVGRNPRTGEAVEVEDKKVPFF
KTGKLLRDRLNAK
>Mature_93_residues
MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARVGRNPRTGEAVEVEDKKVPFF
KTGKLLRDRLNAK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=49.4505494505495, Blast_Score=97, Evalue=1e-22,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=41.7582417582418, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=38.6363636363636, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1788005, Length=74, Percent_Identity=39.1891891891892, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10654; Mature: 10654

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHC
GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLNAK
CCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHC
GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLNAK
CCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA