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The map label for this gene is nocR [H]

Identifier: 77465466

GI number: 77465466

Start: 533327

End: 534256

Strand: Direct

Name: nocR [H]

Synonym: RSP_3464

Alternate gene names: 77465466

Gene position: 533327-534256 (Clockwise)

Preceding gene: 77465465

Following gene: 77465467

Centisome position: 56.56

GC content: 69.89

Gene sequence:

>930_bases
GTGATCGGCGGGCGGACGGCGCCCGAGATCTCGCTGCGGCTCCTCGAGATCTTCGCGGCCATGATGCGCGCGGGCACCAC
GGTCGAGGCGGCCGAGATGCTGGGCGTGTCGCAGCCCGCCGTCTCGGCCGGCCTCAAGCAGCTCGAGACCCAGCTCGGCA
TCGTGCTCTTCGAGCGCGCCTCGCGCCGCATGATGCCCACGGCCGAGGCGCGCGAGCTGTTCGCCGAGATCCGGCCCATG
TTCTCGATGCTGCGCAGCTTCACCCAGACCGCCCGCGACATCCGCGAGGGGTTGAGCGGGCGGCTGCGGATCATCAGCAC
CCCGCCCATCGGCCACACCCTCGCCCCCCGTGCGCTGGTCGAGTTCCTGCGCGAGCGTCCCGGCGTCTCGGTGGCCTTCG
ACGTGCGCCGCCTCGAACATGTGATCGACGCGGTGCAGAGCGGCAGTGCCGATCTGGGCCTCGCCCTCAGCATGGACCGC
TATACGGCGCTCAATTCCGAGGTGCTGCACGAGACGCATATGGTGGCGCTCGTGGATGCGGCGGGGCCGCTTGCCGCGCA
GACACAGGTCACGGCCGAAGACCTTGCCGCGCATCCCTTCGTGGGGATCGAGGGCGACTCGAAGCTCGGCGGCCTCGTCC
GCTCGGCCTTCCTGCAGAGCGGACTGGGCTACCTGCCCCAGATCGAGGTCCGCTATGTCTCGACCGCGGCCGAGCTTGTG
AACCACGGGCTCGGCAATGCGGTGGTCGATCCCTTCACCGCCCATTATCATGCCCGGCCCGGCATCGCGATCCGGCCCTT
CGTGCCGGCCTGCATGACCCGCGTCGTGCTGCTCACCCGCCGCGGCGTGCCGCGCAGCCAGCTCGCCCATGCCTTCGCCG
CGACGCTGAAACCGATTTTCGCCGAACCGCTCCGGAGAATTCACGCATGA

Upstream 100 bases:

>100_bases
GCTTTGCGCCCCGCCGCGCCCAGCTCGAGCGCGATCTCGGCATCGCGGTCGTCGATCCGGTGCTGGCCGCCGCAGGCATG
GCCATGGGCGCGGTGCTGGC

Downstream 100 bases:

>100_bases
TGCTCGACCTGGGGTCGCTGCCGCCCGCCACCCGCTACAAGCTGCTGACCGCCATCGTCCTGCCGCGCCCGGTGGCCTGG
GTCACGACGCAGAGCCCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MIGGRTAPEISLRLLEIFAAMMRAGTTVEAAEMLGVSQPAVSAGLKQLETQLGIVLFERASRRMMPTAEARELFAEIRPM
FSMLRSFTQTARDIREGLSGRLRIISTPPIGHTLAPRALVEFLRERPGVSVAFDVRRLEHVIDAVQSGSADLGLALSMDR
YTALNSEVLHETHMVALVDAAGPLAAQTQVTAEDLAAHPFVGIEGDSKLGGLVRSAFLQSGLGYLPQIEVRYVSTAAELV
NHGLGNAVVDPFTAHYHARPGIAIRPFVPACMTRVVLLTRRGVPRSQLAHAFAATLKPIFAEPLRRIHA

Sequences:

>Translated_309_residues
MIGGRTAPEISLRLLEIFAAMMRAGTTVEAAEMLGVSQPAVSAGLKQLETQLGIVLFERASRRMMPTAEARELFAEIRPM
FSMLRSFTQTARDIREGLSGRLRIISTPPIGHTLAPRALVEFLRERPGVSVAFDVRRLEHVIDAVQSGSADLGLALSMDR
YTALNSEVLHETHMVALVDAAGPLAAQTQVTAEDLAAHPFVGIEGDSKLGGLVRSAFLQSGLGYLPQIEVRYVSTAAELV
NHGLGNAVVDPFTAHYHARPGIAIRPFVPACMTRVVLLTRRGVPRSQLAHAFAATLKPIFAEPLRRIHA
>Mature_309_residues
MIGGRTAPEISLRLLEIFAAMMRAGTTVEAAEMLGVSQPAVSAGLKQLETQLGIVLFERASRRMMPTAEARELFAEIRPM
FSMLRSFTQTARDIREGLSGRLRIISTPPIGHTLAPRALVEFLRERPGVSVAFDVRRLEHVIDAVQSGSADLGLALSMDR
YTALNSEVLHETHMVALVDAAGPLAAQTQVTAEDLAAHPFVGIEGDSKLGGLVRSAFLQSGLGYLPQIEVRYVSTAAELV
NHGLGNAVVDPFTAHYHARPGIAIRPFVPACMTRVVLLTRRGVPRSQLAHAFAATLKPIFAEPLRRIHA

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=288, Percent_Identity=28.125, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788481, Length=240, Percent_Identity=30.8333333333333, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693105, Length=234, Percent_Identity=22.6495726495727, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787879, Length=284, Percent_Identity=27.4647887323944, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=287, Percent_Identity=21.2543554006969, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=26.2962962962963, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787530, Length=229, Percent_Identity=27.5109170305677, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33453; Mature: 33453

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50931 HTH_LYSR ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGRTAPEISLRLLEIFAAMMRAGTTVEAAEMLGVSQPAVSAGLKQLETQLGIVLFERA
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
SRRMMPTAEARELFAEIRPMFSMLRSFTQTARDIREGLSGRLRIISTPPIGHTLAPRALV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
EFLRERPGVSVAFDVRRLEHVIDAVQSGSADLGLALSMDRYTALNSEVLHETHMVALVDA
HHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEC
AGPLAAQTQVTAEDLAAHPFVGIEGDSKLGGLVRSAFLQSGLGYLPQIEVRYVSTAAELV
CCCCHHHHHCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
NHGLGNAVVDPFTAHYHARPGIAIRPFVPACMTRVVLLTRRGVPRSQLAHAFAATLKPIF
HCCCCCHHCCCHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AEPLRRIHA
HHHHHHHCC
>Mature Secondary Structure
MIGGRTAPEISLRLLEIFAAMMRAGTTVEAAEMLGVSQPAVSAGLKQLETQLGIVLFERA
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
SRRMMPTAEARELFAEIRPMFSMLRSFTQTARDIREGLSGRLRIISTPPIGHTLAPRALV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
EFLRERPGVSVAFDVRRLEHVIDAVQSGSADLGLALSMDRYTALNSEVLHETHMVALVDA
HHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEC
AGPLAAQTQVTAEDLAAHPFVGIEGDSKLGGLVRSAFLQSGLGYLPQIEVRYVSTAAELV
CCCCHHHHHCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
NHGLGNAVVDPFTAHYHARPGIAIRPFVPACMTRVVLLTRRGVPRSQLAHAFAATLKPIF
HCCCCCHHCCCHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AEPLRRIHA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]