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The map label for this gene is ydaM [C]

Identifier: 77465403

GI number: 77465403

Start: 466134

End: 466535

Strand: Direct

Name: ydaM [C]

Synonym: RSP_3401

Alternate gene names: 77465403

Gene position: 466134-466535 (Clockwise)

Preceding gene: 77465402

Following gene: 77465404

Centisome position: 49.43

GC content: 75.12

Gene sequence:

>402_bases
ATGCGATGGGCGACCGGGTGCTGCAACGGTTCGCGTCGAGCTGTCGCCCGTCCTGCCCGAGGGGCGCGCGCCTTCCGCAT
CGGCGGCGAAGAATTCCTGACCCTCTGCCCGGGACAGGACACGGGGGCGGTGGTGGACCTTCTCGAAAAGCTCGCACGCC
GGCTGGAGGCGGACCCGCCGCTGCGCGACGGAGACCTGCCGCGCCTGACCTTCTCGGCCGGCGTGGCCATGCGGCCCGGC
GACGGCAGGAGCCTCGGCCAGCTGACCGCCCGGGCCGACGCGCGGCTCTACGAGGCGAAGCGTCGGGGCCGCAATCAGAT
CCTGCATCTGGACGCAGCGCGGCGCGACGCGGCCGATGCGGCGGCGGTCCTGTCCGGGCCGCCGCGGCCGGCCTCGGCCT
GA

Upstream 100 bases:

>100_bases
CGCGCCTCGACCGTCAGTTGAGCCGCCACCGAGCGCGAGGGGCCATCGCCCTCGCCTGATCGACATCGACCATTTCAACA
GATCAACGACCGGCTGGGCC

Downstream 100 bases:

>100_bases
GACGAGGTGGCTCCGATGATCCCGCATCCGCCCGCAGTCCTCGCCCATCGCCTGTCGGAAGGCCAGCGCCTCGCCACGCC
GCTGATGCGGGCGCTGATGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Response Regulator Receiver Protein

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRWATGCCNGSRRAVARPARGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARRLEADPPLRDGDLPRLTFSAGVAMRPG
DGRSLGQLTARADARLYEAKRRGRNQILHLDAARRDAADAAAVLSGPPRPASA

Sequences:

>Translated_133_residues
MRWATGCCNGSRRAVARPARGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARRLEADPPLRDGDLPRLTFSAGVAMRPG
DGRSLGQLTARADARLYEAKRRGRNQILHLDAARRDAADAAAVLSGPPRPASA
>Mature_133_residues
MRWATGCCNGSRRAVARPARGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARRLEADPPLRDGDLPRLTFSAGVAMRPG
DGRSLGQLTARADARLYEAKRRGRNQILHLDAARRDAADAAAVLSGPPRPASA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14202; Mature: 14202

Theoretical pI: Translated: 11.38; Mature: 11.38

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWATGCCNGSRRAVARPARGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARRLEADPP
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCC
LRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQILHLDAARRDAADA
CCCCCCCEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCHHHH
AAVLSGPPRPASA
HHHHCCCCCCCCC
>Mature Secondary Structure
MRWATGCCNGSRRAVARPARGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARRLEADPP
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCC
LRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQILHLDAARRDAADA
CCCCCCCEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCHHHH
AAVLSGPPRPASA
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA