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The map label for this gene is ygiD [H]

Identifier: 77465136

GI number: 77465136

Start: 167902

End: 168723

Strand: Reverse

Name: ygiD [H]

Synonym: RSP_3123

Alternate gene names: 77465136

Gene position: 168723-167902 (Counterclockwise)

Preceding gene: 77465141

Following gene: 77465135

Centisome position: 17.89

GC content: 67.88

Gene sequence:

>822_bases
ATGCACAAGCTCGACACTCTGAAGGAGCGCCTCGCGCCCTCCGACCGGATGCCTGTGGTCTTCCTTGGCCACGGTAGCCC
GATGAACGCCATCGAGGACACGGCCTACAGCCGCGCCTGGACAAGGCTCGGCGAGAGCCTGCCGCGGCCTCGCGCCATCC
TCGTCGTATCGGCGCACTGGATGACCCGGGGCACGACGCTGGTCGATGTCTCGGCCATGCCGCGGACGATCCACGATTTC
TACAACTTCCCCGAGGCGCTTCATGCGCAACGCTATCCCGCGCGGGGCGCGCCGCAGCTGGCGCGCGAAGTGACCTCGCT
GCTGGCCAGCCACCACGCCGCCGAGGATGACAGCTGGGGCCTCGACCACGGCGCCTGGACGGTGCTGAAGTTCCTCTATC
CCGAGGCCGACGTGCCGGTCTTCCAGGTCTCGATCGACATGACCCGCGACCTCGACCACCAGCTCGAGATCGGGCGGACA
CTGTCCGAGCTGCGCGACCGCGGCGTGCTGATCCTCGGGTCCGGCAATGTGGTGCACAACCTGCGCGCGGTGAACTGGAG
CGCGGGCAGCAAGCCACATGGGTTCGCGCTGGAATTCGACGCCCTCTTCGCCGACCGGCTGACCGAGCGCGACTTCCGCA
CGCTCGCCGACCGCAAGGGGCTGGGATCGCTGCTGACGATGGCGCATCCGTCGGTCGATCACTACATGCCGGCGCTCACC
ATCGCCGGCGCCTCGGACGAGCGCGACGAACTGACCTTCATGACGGACGCCATCGAGCTCGCCTCGGTCTCGATGCGCTC
CTTCGTCTTCCACGCCCGATAG

Upstream 100 bases:

>100_bases
GGCAGATCGCCTGACCCGAACCCGCGCGCCTGTCCGGCGCCCCTCCGCTCCGGCACCGCCTTGCGCCGGCTCTCCCCGAA
AGGACAGTCCCGTGTCTGTC

Downstream 100 bases:

>100_bases
GAGAAGCCCCATGCTCGTGAACGGGAAATGGACCGCCGACTGGCAGCCGGTGCAGAAGGCCGATGACCATGGACGCTTCG
TGCGCCAGGTGTCGAGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MHKLDTLKERLAPSDRMPVVFLGHGSPMNAIEDTAYSRAWTRLGESLPRPRAILVVSAHWMTRGTTLVDVSAMPRTIHDF
YNFPEALHAQRYPARGAPQLAREVTSLLASHHAAEDDSWGLDHGAWTVLKFLYPEADVPVFQVSIDMTRDLDHQLEIGRT
LSELRDRGVLILGSGNVVHNLRAVNWSAGSKPHGFALEFDALFADRLTERDFRTLADRKGLGSLLTMAHPSVDHYMPALT
IAGASDERDELTFMTDAIELASVSMRSFVFHAR

Sequences:

>Translated_273_residues
MHKLDTLKERLAPSDRMPVVFLGHGSPMNAIEDTAYSRAWTRLGESLPRPRAILVVSAHWMTRGTTLVDVSAMPRTIHDF
YNFPEALHAQRYPARGAPQLAREVTSLLASHHAAEDDSWGLDHGAWTVLKFLYPEADVPVFQVSIDMTRDLDHQLEIGRT
LSELRDRGVLILGSGNVVHNLRAVNWSAGSKPHGFALEFDALFADRLTERDFRTLADRKGLGSLLTMAHPSVDHYMPALT
IAGASDERDELTFMTDAIELASVSMRSFVFHAR
>Mature_273_residues
MHKLDTLKERLAPSDRMPVVFLGHGSPMNAIEDTAYSRAWTRLGESLPRPRAILVVSAHWMTRGTTLVDVSAMPRTIHDF
YNFPEALHAQRYPARGAPQLAREVTSLLASHHAAEDDSWGLDHGAWTVLKFLYPEADVPVFQVSIDMTRDLDHQLEIGRT
LSELRDRGVLILGSGNVVHNLRAVNWSAGSKPHGFALEFDALFADRLTERDFRTLADRKGLGSLLTMAHPSVDHYMPALT
IAGASDERDELTFMTDAIELASVSMRSFVFHAR

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=263, Percent_Identity=45.6273764258555, Blast_Score=234, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30480; Mature: 30480

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKLDTLKERLAPSDRMPVVFLGHGSPMNAIEDTAYSRAWTRLGESLPRPRAILVVSAHW
CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECH
MTRGTTLVDVSAMPRTIHDFYNFPEALHAQRYPARGAPQLAREVTSLLASHHAAEDDSWG
HCCCCEEEECCCCCHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LDHGAWTVLKFLYPEADVPVFQVSIDMTRDLDHQLEIGRTLSELRDRGVLILGSGNVVHN
CCHHHHHHHHHHCCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHCCEEEEECCCEEEE
LRAVNWSAGSKPHGFALEFDALFADRLTERDFRTLADRKGLGSLLTMAHPSVDHYMPALT
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHCCEEE
IAGASDERDELTFMTDAIELASVSMRSFVFHAR
EECCCCCCCHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MHKLDTLKERLAPSDRMPVVFLGHGSPMNAIEDTAYSRAWTRLGESLPRPRAILVVSAHW
CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECH
MTRGTTLVDVSAMPRTIHDFYNFPEALHAQRYPARGAPQLAREVTSLLASHHAAEDDSWG
HCCCCEEEECCCCCHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LDHGAWTVLKFLYPEADVPVFQVSIDMTRDLDHQLEIGRTLSELRDRGVLILGSGNVVHN
CCHHHHHHHHHHCCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHCCEEEEECCCEEEE
LRAVNWSAGSKPHGFALEFDALFADRLTERDFRTLADRKGLGSLLTMAHPSVDHYMPALT
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHCCEEE
IAGASDERDELTFMTDAIELASVSMRSFVFHAR
EECCCCCCCHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]