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The map label for this gene is rpoE [H]

Identifier: 77465109

GI number: 77465109

Start: 138518

End: 139048

Strand: Reverse

Name: rpoE [H]

Synonym: RSP_3095

Alternate gene names: 77465109

Gene position: 139048-138518 (Counterclockwise)

Preceding gene: 77465110

Following gene: 77465108

Centisome position: 14.75

GC content: 73.07

Gene sequence:

>531_bases
ATGCGCGAAACAGATGAGATCCTGGCCGAACTGACCCCGCTCCGGCGCTACGCCCGGTCGCTCACCCGCGACGAGGCGGA
GGCCGAGGATCTCGTGCAGGAGGCGCTCCTGCGTGCGCATGAGCGGCGGGCGAGCTTCCGGCGCGGCAAGGGGCTCAGGG
TCTGGCTGATGTCGATCCTGCACAACCTCTTCATCGATGCGCTGCGCAGCCGCCGCGCCCGCGAGCGGCGCGAGGCGGCG
GCGATGGAGGCGGCGCCTCTGTCGCACCCCGCCTCGCAGGAGAGCGCGGTGCGGCTGGCCCAGATCCGCGAGGCCTTCGC
GCGCCTGCCCGAAGAGCAGCGCTCGGCGCTGCATCTCGTGGCGATCGAGGGGCTGTCCTATGCCGAGGCCGCCGAGGTGC
TCGGCGTGCCGCAGGGCACGCTCATGTCGCGGATCGGCCGGGCGCGTGCGGCGCTCCGGGCCTTCGAGAACGGAGAGGCG
GCGCGCCAGCCGCTTCGGGTGGTGGGAGGACGCGATGCGGACGATGCATGA

Upstream 100 bases:

>100_bases
TGGCCGTTACCTCGACCTGTCTGCCGCCCGGCTAAAAAACTTCGGATATTTTTCGCTCTCGCGGGATGAAGGGGCGGCGC
GGCTCCGTATATCCGGCAAG

Downstream 100 bases:

>100_bases
GCCGGTGACCGAGCTCGACCTCGTGGCCTATGTCGACGACCAGCTCGACCCGTGGCGCCGCGTGGCGGTGGAGCGGCATC
TCGCGACCGATCCCGAGGCC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MRETDEILAELTPLRRYARSLTRDEAEAEDLVQEALLRAHERRASFRRGKGLRVWLMSILHNLFIDALRSRRARERREAA
AMEAAPLSHPASQESAVRLAQIREAFARLPEEQRSALHLVAIEGLSYAEAAEVLGVPQGTLMSRIGRARAALRAFENGEA
ARQPLRVVGGRDADDA

Sequences:

>Translated_176_residues
MRETDEILAELTPLRRYARSLTRDEAEAEDLVQEALLRAHERRASFRRGKGLRVWLMSILHNLFIDALRSRRARERREAA
AMEAAPLSHPASQESAVRLAQIREAFARLPEEQRSALHLVAIEGLSYAEAAEVLGVPQGTLMSRIGRARAALRAFENGEA
ARQPLRVVGGRDADDA
>Mature_176_residues
MRETDEILAELTPLRRYARSLTRDEAEAEDLVQEALLRAHERRASFRRGKGLRVWLMSILHNLFIDALRSRRARERREAA
AMEAAPLSHPASQESAVRLAQIREAFARLPEEQRSALHLVAIEGLSYAEAAEVLGVPQGTLMSRIGRARAALRAFENGEA
ARQPLRVVGGRDADDA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19687; Mature: 19687

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRETDEILAELTPLRRYARSLTRDEAEAEDLVQEALLRAHERRASFRRGKGLRVWLMSIL
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HNLFIDALRSRRARERREAAAMEAAPLSHPASQESAVRLAQIREAFARLPEEQRSALHLV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AIEGLSYAEAAEVLGVPQGTLMSRIGRARAALRAFENGEAARQPLRVVGGRDADDA
HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRETDEILAELTPLRRYARSLTRDEAEAEDLVQEALLRAHERRASFRRGKGLRVWLMSIL
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HNLFIDALRSRRARERREAAAMEAAPLSHPASQESAVRLAQIREAFARLPEEQRSALHLV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AIEGLSYAEAAEVLGVPQGTLMSRIGRARAALRAFENGEAARQPLRVVGGRDADDA
HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]