Click here to switch to the map view.

The map label for this gene is sndh

Identifier: 77465086

GI number: 77465086

Start: 112532

End: 113821

Strand: Reverse

Name: sndh

Synonym: RSP_3072

Alternate gene names: NA

Gene position: 113821-112532 (Counterclockwise)

Preceding gene: 77465088

Following gene: 77465085

Centisome position: 12.07

GC content: 71.47

Gene sequence:

>1290_bases
ATGGATTTCCTGGCGCGTGCCACCGCCATCGTCGGCAATACGATGGTCCTGATGCGGCGGTTCGGATCGCCGGGCACCCA
GGCGATCGGGCAGAGCCCGGCCATCCCCGAGGCCCAGAAGCAGGGCATCATGACCCTCAAGATGCCCGCGGCCAAGGGCT
GGGCGCCGGGCCATCTGCCGACGCCCGCACCGGGCCTCAAGGTCAATGCCTTCGCCCGCGATCTGGAACATCCGCGCTGG
ATCGAGGTGCTGCCCTCGGGCGACGTGCTGGTTGCCGAGGCGCGCCAGCTTCCCACCCCGCCGAAGACCCTCCTCGACCG
TGCGGCGCAGGCCACCATGCGCCGCATCCGCGCGCTCGGCGACAGCCCGAACCGCATCACCCTCCTGCGCGACCCGGACG
GCCGGGGCGAGGCGCAAGAGCGCGAGACCTTCCTCGAGAACCAGAGCCAGCCCTTCGGCATGGCGCTGGTGGGCGACACC
TTCTACGTCGGCAACACCGACGGCATTATGGCCTTCCCCTACCGTCCGGGCGCCACGCGGCTCGAGGGGCCGGGACGGCG
CCTGACCACCTTCAAGCCCGGCGGGCACTGGACGCGCAGCCTGATCGTCTCGCCCGACGGGCGCCGGATCTATGCCGGCG
TGGGCTCGCTCAGCAACATCGGCGACGACGGGATGGAGGCCGAGGAGGGCCGCGCCGCGATCTGGGAGCTGGACCTCGCC
AGCGGTCAGGCCCGGATCTATGCCTCGGGCCTGCGCAACCCGGTGGGCCTCGCGTGGGAGCCCACGACGCGCGTGCTCTG
GACCGTGGTCAACGAGCGCGACGGGCTCGGCGACGAGACCCCGCCGGACTATCTGACCTCCGTCGAGGAGGACGGCTTCT
ACGGCTGGCCCTATTGCTACTGGAACCGGATCGTCGACGACCGCGTGCCGCAGGACCCGGCGATGGTCGCCCGCGCGATC
ACGCCCGACTATGCGCTCGGCGGACACACGGCCTCGCTCGGCCTCTGCTGGGTGCCGGCGGGCACGCTGCCGGGCTTCGG
CGACGGGATGGCCATCGGCCAGCACGGCTCGTGGAACCGTTCGAAACTCAGCGGTTACCGGCTGATCTTCGTGCCCTTCG
CGAACGGCCGGCCCTCCGGCCCGCCGCGGGACATCCTGACCGGTTTCCTGTCCGACGACGAGAAGCTGGCCTACGGTCGC
CCGGTCGGCGTGGCGGTGGGCCCCGACCGCCGCTCGCTTCTGCTCGCCGACGATGTGGGCGACGTGATCTGGCGCGTAAC
CGGCGCCTGA

Upstream 100 bases:

>100_bases
CCGGCAGGACACGGCTTGCGTGAAGCCGCACCCATACCTCTTCCGGGATTGACCGTCCCGCCGGCGGCGCTAGCCTTCGG
GGAAAGCAAGAGGACAGCGA

Downstream 100 bases:

>100_bases
GCGCCAGAGCGCGCACCGGCACGGGCAGGACGCGGTGGCACCGCCTCCCGCAGGGGCACGCGGCGGGTTGATGCGCCCCT
CCGCCTCCTGGAGAGGCATA

Product: putative L-sorbosone dehydrogenase

Products: NA

Alternate protein names: SNDH [H]

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MDFLARATAIVGNTMVLMRRFGSPGTQAIGQSPAIPEAQKQGIMTLKMPAAKGWAPGHLPTPAPGLKVNAFARDLEHPRW
IEVLPSGDVLVAEARQLPTPPKTLLDRAAQATMRRIRALGDSPNRITLLRDPDGRGEAQERETFLENQSQPFGMALVGDT
FYVGNTDGIMAFPYRPGATRLEGPGRRLTTFKPGGHWTRSLIVSPDGRRIYAGVGSLSNIGDDGMEAEEGRAAIWELDLA
SGQARIYASGLRNPVGLAWEPTTRVLWTVVNERDGLGDETPPDYLTSVEEDGFYGWPYCYWNRIVDDRVPQDPAMVARAI
TPDYALGGHTASLGLCWVPAGTLPGFGDGMAIGQHGSWNRSKLSGYRLIFVPFANGRPSGPPRDILTGFLSDDEKLAYGR
PVGVAVGPDRRSLLLADDVGDVIWRVTGA

Sequences:

>Translated_429_residues
MDFLARATAIVGNTMVLMRRFGSPGTQAIGQSPAIPEAQKQGIMTLKMPAAKGWAPGHLPTPAPGLKVNAFARDLEHPRW
IEVLPSGDVLVAEARQLPTPPKTLLDRAAQATMRRIRALGDSPNRITLLRDPDGRGEAQERETFLENQSQPFGMALVGDT
FYVGNTDGIMAFPYRPGATRLEGPGRRLTTFKPGGHWTRSLIVSPDGRRIYAGVGSLSNIGDDGMEAEEGRAAIWELDLA
SGQARIYASGLRNPVGLAWEPTTRVLWTVVNERDGLGDETPPDYLTSVEEDGFYGWPYCYWNRIVDDRVPQDPAMVARAI
TPDYALGGHTASLGLCWVPAGTLPGFGDGMAIGQHGSWNRSKLSGYRLIFVPFANGRPSGPPRDILTGFLSDDEKLAYGR
PVGVAVGPDRRSLLLADDVGDVIWRVTGA
>Mature_429_residues
MDFLARATAIVGNTMVLMRRFGSPGTQAIGQSPAIPEAQKQGIMTLKMPAAKGWAPGHLPTPAPGLKVNAFARDLEHPRW
IEVLPSGDVLVAEARQLPTPPKTLLDRAAQATMRRIRALGDSPNRITLLRDPDGRGEAQERETFLENQSQPFGMALVGDT
FYVGNTDGIMAFPYRPGATRLEGPGRRLTTFKPGGHWTRSLIVSPDGRRIYAGVGSLSNIGDDGMEAEEGRAAIWELDLA
SGQARIYASGLRNPVGLAWEPTTRVLWTVVNERDGLGDETPPDYLTSVEEDGFYGWPYCYWNRIVDDRVPQDPAMVARAI
TPDYALGGHTASLGLCWVPAGTLPGFGDGMAIGQHGSWNRSKLSGYRLIFVPFANGRPSGPPRDILTGFLSDDEKLAYGR
PVGVAVGPDRRSLLLADDVGDVIWRVTGA

Specific function: Converts L-sorbosone into 2-keto-L-gulonic acid (2KGA) [H]

COG id: COG2133

COG function: function code G; Glucose/sorbosone dehydrogenases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.burgdorferi BB024 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011042
- InterPro:   IPR012938
- InterPro:   IPR011041 [H]

Pfam domain/function: PF07995 GSDH [H]

EC number: NA

Molecular weight: Translated: 46467; Mature: 46467

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLARATAIVGNTMVLMRRFGSPGTQAIGQSPAIPEAQKQGIMTLKMPAAKGWAPGHLP
CCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCC
TPAPGLKVNAFARDLEHPRWIEVLPSGDVLVAEARQLPTPPKTLLDRAAQATMRRIRALG
CCCCCCEEHHHHHHCCCCCEEEEECCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHC
DSPNRITLLRDPDGRGEAQERETFLENQSQPFGMALVGDTFYVGNTDGIMAFPYRPGATR
CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCCCEEEECCCCCCCC
LEGPGRRLTTFKPGGHWTRSLIVSPDGRRIYAGVGSLSNIGDDGMEAEEGRAAIWELDLA
CCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
SGQARIYASGLRNPVGLAWEPTTRVLWTVVNERDGLGDETPPDYLTSVEEDGFYGWPYCY
CCCEEEEECCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHH
WNRIVDDRVPQDPAMVARAITPDYALGGHTASLGLCWVPAGTLPGFGDGMAIGQHGSWNR
HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCC
SKLSGYRLIFVPFANGRPSGPPRDILTGFLSDDEKLAYGRPVGVAVGPDRRSLLLADDVG
HHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEECCCCCEEEEECCCC
DVIWRVTGA
CEEEEEECC
>Mature Secondary Structure
MDFLARATAIVGNTMVLMRRFGSPGTQAIGQSPAIPEAQKQGIMTLKMPAAKGWAPGHLP
CCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCC
TPAPGLKVNAFARDLEHPRWIEVLPSGDVLVAEARQLPTPPKTLLDRAAQATMRRIRALG
CCCCCCEEHHHHHHCCCCCEEEEECCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHC
DSPNRITLLRDPDGRGEAQERETFLENQSQPFGMALVGDTFYVGNTDGIMAFPYRPGATR
CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCCCEEEECCCCCCCC
LEGPGRRLTTFKPGGHWTRSLIVSPDGRRIYAGVGSLSNIGDDGMEAEEGRAAIWELDLA
CCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
SGQARIYASGLRNPVGLAWEPTTRVLWTVVNERDGLGDETPPDYLTSVEEDGFYGWPYCY
CCCEEEEECCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHH
WNRIVDDRVPQDPAMVARAITPDYALGGHTASLGLCWVPAGTLPGFGDGMAIGQHGSWNR
HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCC
SKLSGYRLIFVPFANGRPSGPPRDILTGFLSDDEKLAYGRPVGVAVGPDRRSLLLADDVG
HHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEECCCCCEEEEECCCC
DVIWRVTGA
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7574579 [H]