| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
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The map label for this gene is gsiB [H]
Identifier: 77465047
GI number: 77465047
Start: 66628
End: 68187
Strand: Direct
Name: gsiB [H]
Synonym: RSP_3034
Alternate gene names: 77465047
Gene position: 66628-68187 (Clockwise)
Preceding gene: 77465046
Following gene: 77465048
Centisome position: 7.07
GC content: 67.24
Gene sequence:
>1560_bases ATGACCGGACTCCCCCTGAGCCGACGCAGGTTCGTCCAGACCGCCGCCGCCGCGGGTCTTCTGATCCCCGCCGCGGGCCT TGTCCCCGGTGCCGCGTTCGCGCAGGAGGGCCGGATCCTGCGGATCCGTAACGACGGCGACATGCGCCGCCTCGACCCGG CGACCCGCGGCGGCTGGTATGACGAGACGGTGATGTTCTCGATCTTCTCCGGTCTCGTGCGCTACAAGGCCGGCGACGCG TGGGGATGGGAGCTGGACGCCGCAGAGAGCATCGACGACAGCGATCCGCAGCATGTCAAATTCACCCTGCGCCCCGGCAT CCAGTTCACCGGCGGTTTCGGCGAGATGACCGCCGAAGATGTGAAATTCTCCTACGAGCGCTTCCGGGATCCCGACGTCA ATGCCGTCTATGGCGCAGATTGGGCGGCTCTCGACCATGTCGAGGTCACCGGCACCCATAGCGGCATCATCCACCTCAGC CGCCCCTTCGCGCCGCTGTTCACCTCGACCCTGCCGCATGCTTCGGGGCTGATCCTGTCCAGGGCCGCGATGGAGGCCGC GGGCAGGTCGGTGATCGACACCGATCCTCTGGCCTGTTCCGGCCCCTATCAGATCGCGGAATGGCGCCCGCGCGAGCTGA TCCATCTGGTGCGCAACCCCGGCTGGGTCGGGCCCGCGCCCCATTTCGACGAGATCCGCCTGCTGCCGCTGACCGACCTG ATCTCGGCCGAGACCGCCTTCGACGCCGGCGACATCGACGTCACGCAGATCGCGGTCAACTCCATCGCCGTGCGCGATGC GGAGGCCGACAATCTGGTGGTCAAGCCGGCGCTGGCCTACACGTGGCTCGGCATGAACATCGAGAACGAGGTGCTGCTGG ATCTGCGCATCCGCCGCGCGATCCAGCATGCGATCAACACCCGGGAGGTCGTCGAAGGCACCTTCGGCGAGGCGGTCACT CCGGCCCATGGCCTGATCCCGCCGCCGCTGCTCGGCGCACGCGAGGCCAATCTCTACGGCTACGATCCCGACGCCGCCCG TGCCCTGCTGGCCGAGGCCGGGGTGCCCGCGCTGCAGCTGACCCTGTCCTTCAACGGCGATCCTGACATGATGATCGCCG CTCAGGTCATTCAGGCGCATCTGGCCGCCGTCGGCATCACGCTGGAGATCCGCGCGATGGATGGTGCGACGCTGACCGCG CAGCAGCAGGACAGCGAAGGCGGCACCTACAAGGACATCCAGCTGTTCTTCTCGACCTTCACCACGGCCCCCGATCCCAG CTGGGTCACCGAATGGTTCACCTGCGCCCAGATCGGCGACTGGAACTTCCAGCGCACCTGCTCGGAAGAGTGGGACAGCA GGAATGCCGCCGCGGCCGAGGAGAGCGACCCGACCAGCCGCGCCGCCACCTATGTCGATCTGCAGAACCAGCTGGAAGAG ACCGGCGCCTATGTCTTCCTGATGCATGGCGTCAATGCCTGGATCTCGAAGCCCGGGATCCGAACCGCCTACAGCGCCGA TGCGCAATGGGCGCTGCTGCGCGACTTCGCGGCCGTGTGA
Upstream 100 bases:
>100_bases CCGGCCCGCGGCCGCCTCGTGACCTGCCATCGGGCCGAAGAGCTGATGGCAGCCCCGCAATAACCACAACAACACCTCCC AACAGCAGAGAAACATCATC
Downstream 100 bases:
>100_bases TCCGGCCCGGCCCCTGCGGGGGCCGGCACCACGATCCGGGCCTGCCATCGCACGCCCGGCCCCCCTGTCTCAGTTGCACG AACCGGCCGCCCGCCTCTGC
Product: ABC peptide/opine transporter, periplasmic substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MTGLPLSRRRFVQTAAAAGLLIPAAGLVPGAAFAQEGRILRIRNDGDMRRLDPATRGGWYDETVMFSIFSGLVRYKAGDA WGWELDAAESIDDSDPQHVKFTLRPGIQFTGGFGEMTAEDVKFSYERFRDPDVNAVYGADWAALDHVEVTGTHSGIIHLS RPFAPLFTSTLPHASGLILSRAAMEAAGRSVIDTDPLACSGPYQIAEWRPRELIHLVRNPGWVGPAPHFDEIRLLPLTDL ISAETAFDAGDIDVTQIAVNSIAVRDAEADNLVVKPALAYTWLGMNIENEVLLDLRIRRAIQHAINTREVVEGTFGEAVT PAHGLIPPPLLGAREANLYGYDPDAARALLAEAGVPALQLTLSFNGDPDMMIAAQVIQAHLAAVGITLEIRAMDGATLTA QQQDSEGGTYKDIQLFFSTFTTAPDPSWVTEWFTCAQIGDWNFQRTCSEEWDSRNAAAAEESDPTSRAATYVDLQNQLEE TGAYVFLMHGVNAWISKPGIRTAYSADAQWALLRDFAAV
Sequences:
>Translated_519_residues MTGLPLSRRRFVQTAAAAGLLIPAAGLVPGAAFAQEGRILRIRNDGDMRRLDPATRGGWYDETVMFSIFSGLVRYKAGDA WGWELDAAESIDDSDPQHVKFTLRPGIQFTGGFGEMTAEDVKFSYERFRDPDVNAVYGADWAALDHVEVTGTHSGIIHLS RPFAPLFTSTLPHASGLILSRAAMEAAGRSVIDTDPLACSGPYQIAEWRPRELIHLVRNPGWVGPAPHFDEIRLLPLTDL ISAETAFDAGDIDVTQIAVNSIAVRDAEADNLVVKPALAYTWLGMNIENEVLLDLRIRRAIQHAINTREVVEGTFGEAVT PAHGLIPPPLLGAREANLYGYDPDAARALLAEAGVPALQLTLSFNGDPDMMIAAQVIQAHLAAVGITLEIRAMDGATLTA QQQDSEGGTYKDIQLFFSTFTTAPDPSWVTEWFTCAQIGDWNFQRTCSEEWDSRNAAAAEESDPTSRAATYVDLQNQLEE TGAYVFLMHGVNAWISKPGIRTAYSADAQWALLRDFAAV >Mature_518_residues TGLPLSRRRFVQTAAAAGLLIPAAGLVPGAAFAQEGRILRIRNDGDMRRLDPATRGGWYDETVMFSIFSGLVRYKAGDAW GWELDAAESIDDSDPQHVKFTLRPGIQFTGGFGEMTAEDVKFSYERFRDPDVNAVYGADWAALDHVEVTGTHSGIIHLSR PFAPLFTSTLPHASGLILSRAAMEAAGRSVIDTDPLACSGPYQIAEWRPRELIHLVRNPGWVGPAPHFDEIRLLPLTDLI SAETAFDAGDIDVTQIAVNSIAVRDAEADNLVVKPALAYTWLGMNIENEVLLDLRIRRAIQHAINTREVVEGTFGEAVTP AHGLIPPPLLGAREANLYGYDPDAARALLAEAGVPALQLTLSFNGDPDMMIAAQVIQAHLAAVGITLEIRAMDGATLTAQ QQDSEGGTYKDIQLFFSTFTTAPDPSWVTEWFTCAQIGDWNFQRTCSEEWDSRNAAAAEESDPTSRAATYVDLQNQLEET GAYVFLMHGVNAWISKPGIRTAYSADAQWALLRDFAAV
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=400, Percent_Identity=25.25, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1787495, Length=533, Percent_Identity=23.0769230769231, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787762, Length=479, Percent_Identity=26.7223382045929, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1789966, Length=494, Percent_Identity=22.2672064777328, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789397, Length=500, Percent_Identity=22.8, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1789887, Length=479, Percent_Identity=22.3382045929019, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787551, Length=418, Percent_Identity=24.4019138755981, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 56556; Mature: 56425
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLPLSRRRFVQTAAAAGLLIPAAGLVPGAAFAQEGRILRIRNDGDMRRLDPATRGGWY CCCCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCC DETVMFSIFSGLVRYKAGDAWGWELDAAESIDDSDPQHVKFTLRPGIQFTGGFGEMTAED HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCHHH VKFSYERFRDPDVNAVYGADWAALDHVEVTGTHSGIIHLSRPFAPLFTSTLPHASGLILS HHHHHHHCCCCCCCEEECCCEEEECCEEEECCCCCEEEECCCCHHHHHHCCCCCCCHHHH RAAMEAAGRSVIDTDPLACSGPYQIAEWRPRELIHLVRNPGWVGPAPHFDEIRLLPLTDL HHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHH ISAETAFDAGDIDVTQIAVNSIAVRDAEADNLVVKPALAYTWLGMNIENEVLLDLRIRRA HHHHCCCCCCCCCCEEEEEHHEEEECCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHH IQHAINTREVVEGTFGEAVTPAHGLIPPPLLGAREANLYGYDPDAARALLAEAGVPALQL HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE TLSFNGDPDMMIAAQVIQAHLAAVGITLEIRAMDGATLTAQQQDSEGGTYKDIQLFFSTF EEEECCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHH TTAPDPSWVTEWFTCAQIGDWNFQRTCSEEWDSRNAAAAEESDPTSRAATYVDLQNQLEE CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHEEEHHHHHHHHH TGAYVFLMHGVNAWISKPGIRTAYSADAQWALLRDFAAV CCCEEEEEECCHHHHCCCCCCEEECCCCCHHHHHHHHCC >Mature Secondary Structure TGLPLSRRRFVQTAAAAGLLIPAAGLVPGAAFAQEGRILRIRNDGDMRRLDPATRGGWY CCCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCC DETVMFSIFSGLVRYKAGDAWGWELDAAESIDDSDPQHVKFTLRPGIQFTGGFGEMTAED HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCHHH VKFSYERFRDPDVNAVYGADWAALDHVEVTGTHSGIIHLSRPFAPLFTSTLPHASGLILS HHHHHHHCCCCCCCEEECCCEEEECCEEEECCCCCEEEECCCCHHHHHHCCCCCCCHHHH RAAMEAAGRSVIDTDPLACSGPYQIAEWRPRELIHLVRNPGWVGPAPHFDEIRLLPLTDL HHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHH ISAETAFDAGDIDVTQIAVNSIAVRDAEADNLVVKPALAYTWLGMNIENEVLLDLRIRRA HHHHCCCCCCCCCCEEEEEHHEEEECCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHH IQHAINTREVVEGTFGEAVTPAHGLIPPPLLGAREANLYGYDPDAARALLAEAGVPALQL HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE TLSFNGDPDMMIAAQVIQAHLAAVGITLEIRAMDGATLTAQQQDSEGGTYKDIQLFFSTF EEEECCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHH TTAPDPSWVTEWFTCAQIGDWNFQRTCSEEWDSRNAAAAEESDPTSRAATYVDLQNQLEE CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHEEEHHHHHHHHH TGAYVFLMHGVNAWISKPGIRTAYSADAQWALLRDFAAV CCCEEEEEECCHHHHCCCCCCEEECCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA