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The map label for this gene is yagA [C]

Identifier: 77465025

GI number: 77465025

Start: 42204

End: 42785

Strand: Reverse

Name: yagA [C]

Synonym: RSP_3007

Alternate gene names: 77465025

Gene position: 42785-42204 (Counterclockwise)

Preceding gene: 77465026

Following gene: 77465023

Centisome position: 4.54

GC content: 64.26

Gene sequence:

>582_bases
ATGGACCAGTCGACGAAGGCTCCGAAGGCGCGGAAGCGCGACCCGGACACGAAGCTGGCTCAGCACCGCTTGAGCGTGCT
GGAGTTGGCGAAGGAACTCGGCAACGTCGCGGAGGCCTGTCGGCAGCGGGGGTTGGACCGGACCAGCTTCTACGAGTGGA
AGCGGCGGTTTCAGACTCAAGGCTTCGAGGGGCTCAAGGACCTGCCGCCGATCCACAAGAGCCACCCGCAATCGACGCCC
CCGGAGACGGTGGCGCGGATCAAGACTCTGGCGCTCGCCCATCCGGCCTATGGCTGCAACCGGTTCGAAGCGATGCTGGC
GCTGGAGGGCATCCGGGTCTCGTCGATCACCATCCAGAAGATCCTGAACGAGAACGGTCTGGGCACGAAGTCCGACCGCT
GGCTGGCGCTGGAGCAGGCCAACGCTGAAAAGAGGATCGAGTTGACCGCGGAGCAGGCCGCCTTCATCGAGAAGCTGAAC
CCGTGCTTTCGGGAAAGGCATGTGGAATCAAGCGCCCCCGGCGAACTCCTCTCCGCCGATACCTTCTTCGTCGGCGCGCT
CAAGGGGATCGGTACCGGATAA

Upstream 100 bases:

>100_bases
GCGTTCGACCGCGTCGCGTGCAGTGAGGAAGTAGGTTTCGTTGGCAAACTTGTCCACTTAACCTTCTTTCCGTGCTAATC
TTGGGAAGGAGGATCGGTTC

Downstream 100 bases:

>100_bases
CCGGCGTGACCCCGGCTCCATCCGCCAGGGCTACGCATGCGATTCCGCCAAGGCTCTTTCCGAACACGGCATCTTGGCAA
GCACCGCGCCGATCCTCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; ISDvu4 Transposase; Integrase; Transposase ISSod; Transposase And Inactivated Derivatives; Integrase Catalytic Domain-Containing Protein; Transposase Fragment; ISSod13 Transposase

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MDQSTKAPKARKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQGFEGLKDLPPIHKSHPQSTP
PETVARIKTLALAHPAYGCNRFEAMLALEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLN
PCFRERHVESSAPGELLSADTFFVGALKGIGTG

Sequences:

>Translated_193_residues
MDQSTKAPKARKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQGFEGLKDLPPIHKSHPQSTP
PETVARIKTLALAHPAYGCNRFEAMLALEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLN
PCFRERHVESSAPGELLSADTFFVGALKGIGTG
>Mature_193_residues
MDQSTKAPKARKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQGFEGLKDLPPIHKSHPQSTP
PETVARIKTLALAHPAYGCNRFEAMLALEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLN
PCFRERHVESSAPGELLSADTFFVGALKGIGTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21494; Mature: 21494

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSTKAPKARKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
GFEGLKDLPPIHKSHPQSTPPETVARIKTLALAHPAYGCNRFEAMLALEGIRVSSITIQK
CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
ILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLNPCFRERHVESSAPGELLSAD
HHCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
TFFVGALKGIGTG
HHHHHHHHHCCCC
>Mature Secondary Structure
MDQSTKAPKARKRDPDTKLAQHRLSVLELAKELGNVAEACRQRGLDRTSFYEWKRRFQTQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
GFEGLKDLPPIHKSHPQSTPPETVARIKTLALAHPAYGCNRFEAMLALEGIRVSSITIQK
CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
ILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIEKLNPCFRERHVESSAPGELLSAD
HHCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
TFFVGALKGIGTG
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA