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The map label for this gene is cmpR [H]

Identifier: 77461861

GI number: 77461861

Start: 6320389

End: 6321351

Strand: Direct

Name: cmpR [H]

Synonym: Pfl01_5641

Alternate gene names: 77461861

Gene position: 6320389-6321351 (Clockwise)

Preceding gene: 77461858

Following gene: 77461864

Centisome position: 98.17

GC content: 61.06

Gene sequence:

>963_bases
ATGCGTAAGTCCCTGATGCGTATGACATTGCGTCAATTGCAGATCTTCAACGAAGTGTGTGATTTACGTTCCTACAGCCG
AGCGGCCGAGGAAATGTCGCTCACGCAACCGGCCGTCAGCCTACAGATTCGTCAGCTCGAAGAGCTGATCGGCCAGCCAT
TATTCGATTACGTCGGCAAAAAGCTCTACATGACCGAGGCCGCCGAAGCACTTCAGCGCGCCAGCCGGGACATTTTCGGC
CGCCTGGAAAACCTCGACATGCAACTGTCGGACATGCAGGGCTCACTGCAGGGCCAGTTGAAGCTGGCGGTGGAATCCAG
CGCCAAATACTTCGTGCCGCACCTGTTCGCGGCGTTCAAGCGCCAGCATCCCGAAGTAAACCTGCAACTGACGGTGGTCA
ACCGTGGCCAGGTCATCCGCCGGCTCTCCGACAACCGCGACGATCTGGTGATCATGTCGATGGTGCCACAGGACATGGGC
CTGGAGTTCCTGCCGTTCCTCAACAATCCGATCGTCGCCGTGGCGCGTCCGGATCATCCGTTGGCACACATGGGCCCGCT
GCGCTTGCAGGATCTCGAACCGTATACCTTGCTGATCCGCGAACCCGGCTCGGGCACGCGACTGGCCTGCGAGGAGTATT
TCAAAGAGAAGCGCGTGCACTTCACCCAGACCCAGGAAGTGGCGTCAGCCGAAGCCCAGCGTGAATGCGTGGTGGCGGGT
CTGGGCCTGGCGCTGTTGACACGCCACGCCCTGAACCTGGAGCTGGCGACCGGCGGCCTGGTCGAGCTGCCAGTCGAAGA
GTTGCCGCTGTTTCGCAGTTGGTGCCTGGTGCAAGCCAAAGCCAAACGGCTGTCACCGGTGGCGCACGCCTTCCTGGCGT
TTATCCGCAGCGAACGGGTGCAGATCAGCGCGCTGGTTGAGCGCTTCGACGGGAAGCTGCCGGTGCTGCCTGCCAGTGAT
TGA

Upstream 100 bases:

>100_bases
TAGCGCTGCCAAGGGATTAACAAAAATGAATAAAAATTGGGTCAGGCATAAGTAAAGACTTATAGTCATCGCATCAGCCA
ATGGCCAGAGTCGGTAGAAA

Downstream 100 bases:

>100_bases
TATCCTCGGGAAAATCGCCGATTTCGGCCTGAAGCTGGCGGAGTTCGAAGCGATCTTCGATAGCGCGGCGAAACTCCATG
CGGCGCTGGTCTTCCTGCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRKSLMRMTLRQLQIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFDYVGKKLYMTEAAEALQRASRDIFG
RLENLDMQLSDMQGSLQGQLKLAVESSAKYFVPHLFAAFKRQHPEVNLQLTVVNRGQVIRRLSDNRDDLVIMSMVPQDMG
LEFLPFLNNPIVAVARPDHPLAHMGPLRLQDLEPYTLLIREPGSGTRLACEEYFKEKRVHFTQTQEVASAEAQRECVVAG
LGLALLTRHALNLELATGGLVELPVEELPLFRSWCLVQAKAKRLSPVAHAFLAFIRSERVQISALVERFDGKLPVLPASD

Sequences:

>Translated_320_residues
MRKSLMRMTLRQLQIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFDYVGKKLYMTEAAEALQRASRDIFG
RLENLDMQLSDMQGSLQGQLKLAVESSAKYFVPHLFAAFKRQHPEVNLQLTVVNRGQVIRRLSDNRDDLVIMSMVPQDMG
LEFLPFLNNPIVAVARPDHPLAHMGPLRLQDLEPYTLLIREPGSGTRLACEEYFKEKRVHFTQTQEVASAEAQRECVVAG
LGLALLTRHALNLELATGGLVELPVEELPLFRSWCLVQAKAKRLSPVAHAFLAFIRSERVQISALVERFDGKLPVLPASD
>Mature_320_residues
MRKSLMRMTLRQLQIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFDYVGKKLYMTEAAEALQRASRDIFG
RLENLDMQLSDMQGSLQGQLKLAVESSAKYFVPHLFAAFKRQHPEVNLQLTVVNRGQVIRRLSDNRDDLVIMSMVPQDMG
LEFLPFLNNPIVAVARPDHPLAHMGPLRLQDLEPYTLLIREPGSGTRLACEEYFKEKRVHFTQTQEVASAEAQRECVVAG
LGLALLTRHALNLELATGGLVELPVEELPLFRSWCLVQAKAKRLSPVAHAFLAFIRSERVQISALVERFDGKLPVLPASD

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=28.3737024221453, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=24.7422680412371, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790399, Length=263, Percent_Identity=26.615969581749, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787879, Length=290, Percent_Identity=27.2413793103448, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=27.4914089347079, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=24.5674740484429, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=26.158940397351, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788887, Length=304, Percent_Identity=24.0131578947368, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=24.9158249158249, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787530, Length=255, Percent_Identity=25.8823529411765, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=300, Percent_Identity=23.6666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787949, Length=298, Percent_Identity=25.8389261744966, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789204, Length=308, Percent_Identity=25.3246753246753, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=26.1016949152542, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=26.2295081967213, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787128, Length=308, Percent_Identity=21.7532467532468, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=23.5772357723577, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=269, Percent_Identity=23.7918215613383, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787589, Length=129, Percent_Identity=30.2325581395349, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36148; Mature: 36148

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSLMRMTLRQLQIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFDYVGK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCC
KLYMTEAAEALQRASRDIFGRLENLDMQLSDMQGSLQGQLKLAVESSAKYFVPHLFAAFK
EEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
RQHPEVNLQLTVVNRGQVIRRLSDNRDDLVIMSMVPQDMGLEFLPFLNNPIVAVARPDHP
HCCCCCEEEEEEECCHHHHHHHCCCCCCEEEEEECCHHCCCHHHHCCCCCEEEEECCCCC
LAHMGPLRLQDLEPYTLLIREPGSGTRLACEEYFKEKRVHFTQTQEVASAEAQRECVVAG
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LGLALLTRHALNLELATGGLVELPVEELPLFRSWCLVQAKAKRLSPVAHAFLAFIRSERV
HHHHHHHHHHHEEEEECCCEEECCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH
QISALVERFDGKLPVLPASD
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRKSLMRMTLRQLQIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFDYVGK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCC
KLYMTEAAEALQRASRDIFGRLENLDMQLSDMQGSLQGQLKLAVESSAKYFVPHLFAAFK
EEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
RQHPEVNLQLTVVNRGQVIRRLSDNRDDLVIMSMVPQDMGLEFLPFLNNPIVAVARPDHP
HCCCCCEEEEEEECCHHHHHHHCCCCCCEEEEEECCHHCCCHHHHCCCCCEEEEECCCCC
LAHMGPLRLQDLEPYTLLIREPGSGTRLACEEYFKEKRVHFTQTQEVASAEAQRECVVAG
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LGLALLTRHALNLELATGGLVELPVEELPLFRSWCLVQAKAKRLSPVAHAFLAFIRSERV
HHHHHHHHHHHEEEEECCCEEECCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH
QISALVERFDGKLPVLPASD
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA