Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is yeaD [H]

Identifier: 77461839

GI number: 77461839

Start: 6292886

End: 6293785

Strand: Direct

Name: yeaD [H]

Synonym: Pfl01_5618

Alternate gene names: 77461839

Gene position: 6292886-6293785 (Clockwise)

Preceding gene: 77461838

Following gene: 77461844

Centisome position: 97.74

GC content: 62.89

Gene sequence:

>900_bases
ATGAACACGCCCAACGTTGAAGCCGTGAAACTGGATGAACTGAACTGCTGGCGCATCCGCCACGGTCAGGCCGAAGTGCT
GGTGGCCCAGCAAGGCGCGCACATCCTCAGTTATCAGGTGGACGGCCAGCCGCCCCTGATCTGGCTGAACGACAAGGCCG
TGTTCAAGACCGGCAAGAGCATCCGCGCCGGTGTGCCGGTGTGCTGGCCGTGGTTCGGCAAGTTCGAACGCAACCCGCAG
AACGTGCAGGCGATGCGCACGAGCGAAGAACCGGCCGGTGCCCACGGATTTGTCCGGGCGATGGATTGGGAACTGGGCGG
CATCGAAACCGAAGGCGAAAGCCTGAAAGTGGAATTCAAGCTGCCCTACCCCGAGGGCGGTTTTCCGGAATGGCCGCATC
AGGTCGACCTGACCCTGACCCTGCGCCTCGACGATCAGTTGCACATCAGTCTGACCAGCCACAACCGTGGCACCGACACC
GTCAGCATCAGTCAGGCGCTGCACAGCTATTTCGCGGTCAGCGATGTGCGCAACGTGCGCGTCGAAGGCGTGGATGGCCT
GGATTACATCGAGACCCTGGACGACTGGAAAACCTTCACCCAGCAGGGTGATCTGCGTTTTGCCGGGGAAACCGACCGCA
TCTACCTCGACGCCCCTGCGCAACTGAGCATCGTCGACCCGGCCTGGGAACGGCGCATCGTGCTGACCACCACCGGCTCC
CGCACGGCGGTGATCTGGAACCCGTGGATCGACCGCGCCGCTGCGCTCAGCGACATGGACAACGATGGCTGGCAGCGCAT
GCTCTGCATCGAGACGGCGAACGTGATGAGTGATGTGATGAACCTGGCGCCGGATGCCAGTCACACCATGGGTGTCAGCG
TCGGCAGCCAGCCACTCTGA

Upstream 100 bases:

>100_bases
TGGCAGCGGCCGCACCCGTTCGGTTCCGCCACGCGCACGTTAAACCTCGCGGCCGTTTCACGGTCGATAGTCGTCCAAGT
TGCTGATCGAGAGTTGTCCC

Downstream 100 bases:

>100_bases
AAACAAAAATCGCAGCCCTGGGGCTGCGATTTTTTTTGCGGGTCTGAATTACAGATCCGATTCCTGCACCACCCGCACCT
TGTCTGCCTCCAGCGCATAG

Product: aldose 1-epimerase

Products: NA

Alternate protein names: Putative D-hexose-6-phosphate mutarotase; Unknown protein from 2D-page spots T26/PR37 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNTPNVEAVKLDELNCWRIRHGQAEVLVAQQGAHILSYQVDGQPPLIWLNDKAVFKTGKSIRAGVPVCWPWFGKFERNPQ
NVQAMRTSEEPAGAHGFVRAMDWELGGIETEGESLKVEFKLPYPEGGFPEWPHQVDLTLTLRLDDQLHISLTSHNRGTDT
VSISQALHSYFAVSDVRNVRVEGVDGLDYIETLDDWKTFTQQGDLRFAGETDRIYLDAPAQLSIVDPAWERRIVLTTTGS
RTAVIWNPWIDRAAALSDMDNDGWQRMLCIETANVMSDVMNLAPDASHTMGVSVGSQPL

Sequences:

>Translated_299_residues
MNTPNVEAVKLDELNCWRIRHGQAEVLVAQQGAHILSYQVDGQPPLIWLNDKAVFKTGKSIRAGVPVCWPWFGKFERNPQ
NVQAMRTSEEPAGAHGFVRAMDWELGGIETEGESLKVEFKLPYPEGGFPEWPHQVDLTLTLRLDDQLHISLTSHNRGTDT
VSISQALHSYFAVSDVRNVRVEGVDGLDYIETLDDWKTFTQQGDLRFAGETDRIYLDAPAQLSIVDPAWERRIVLTTTGS
RTAVIWNPWIDRAAALSDMDNDGWQRMLCIETANVMSDVMNLAPDASHTMGVSVGSQPL
>Mature_299_residues
MNTPNVEAVKLDELNCWRIRHGQAEVLVAQQGAHILSYQVDGQPPLIWLNDKAVFKTGKSIRAGVPVCWPWFGKFERNPQ
NVQAMRTSEEPAGAHGFVRAMDWELGGIETEGESLKVEFKLPYPEGGFPEWPHQVDLTLTLRLDDQLHISLTSHNRGTDT
VSISQALHSYFAVSDVRNVRVEGVDGLDYIETLDDWKTFTQQGDLRFAGETDRIYLDAPAQLSIVDPAWERRIVLTTTGS
RTAVIWNPWIDRAAALSDMDNDGWQRMLCIETANVMSDVMNLAPDASHTMGVSVGSQPL

Specific function: Unknown

COG id: COG0676

COG function: function code G; Uncharacterized enzymes related to aldose 1-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Glucose-6-phosphate 1-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87081973, Length=273, Percent_Identity=34.0659340659341, Blast_Score=150, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6323746, Length=268, Percent_Identity=29.1044776119403, Blast_Score=98, Evalue=2e-21,
Organism=Drosophila melanogaster, GI19921284, Length=283, Percent_Identity=28.2685512367491, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28574481, Length=170, Percent_Identity=30.5882352941176, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008183
- InterPro:   IPR011013
- InterPro:   IPR014718 [H]

Pfam domain/function: PF01263 Aldose_epim [H]

EC number: =5.1.3.15 [H]

Molecular weight: Translated: 33456; Mature: 33456

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPNVEAVKLDELNCWRIRHGQAEVLVAQQGAHILSYQVDGQPPLIWLNDKAVFKTGKS
CCCCCCEEEEECCCCEEEEECCCEEEEEEECCCEEEEEEECCCCCEEEECCCCEEECCCC
IRAGVPVCWPWFGKFERNPQNVQAMRTSEEPAGAHGFVRAMDWELGGIETEGESLKVEFK
CCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCEEECCCEEEEEEE
LPYPEGGFPEWPHQVDLTLTLRLDDQLHISLTSHNRGTDTVSISQALHSYFAVSDVRNVR
CCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHCEEE
VEGVDGLDYIETLDDWKTFTQQGDLRFAGETDRIYLDAPAQLSIVDPAWERRIVLTTTGS
EECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCEEEEECCCCCCEEEEEECCC
RTAVIWNPWIDRAAALSDMDNDGWQRMLCIETANVMSDVMNLAPDASHTMGVSVGSQPL
EEEEEECCCHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MNTPNVEAVKLDELNCWRIRHGQAEVLVAQQGAHILSYQVDGQPPLIWLNDKAVFKTGKS
CCCCCCEEEEECCCCEEEEECCCEEEEEEECCCEEEEEEECCCCCEEEECCCCEEECCCC
IRAGVPVCWPWFGKFERNPQNVQAMRTSEEPAGAHGFVRAMDWELGGIETEGESLKVEFK
CCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCEEECCCEEEEEEE
LPYPEGGFPEWPHQVDLTLTLRLDDQLHISLTSHNRGTDTVSISQALHSYFAVSDVRNVR
CCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHCEEE
VEGVDGLDYIETLDDWKTFTQQGDLRFAGETDRIYLDAPAQLSIVDPAWERRIVLTTTGS
EECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCEEEEECCCCCCEEEEEECCC
RTAVIWNPWIDRAAALSDMDNDGWQRMLCIETANVMSDVMNLAPDASHTMGVSVGSQPL
EEEEEECCCHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 9298646; 10493123 [H]