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The map label for this gene is yjiR [H]

Identifier: 77461752

GI number: 77461752

Start: 6199343

End: 6200764

Strand: Direct

Name: yjiR [H]

Synonym: Pfl01_5531

Alternate gene names: 77461752

Gene position: 6199343-6200764 (Clockwise)

Preceding gene: 77461750

Following gene: 77461753

Centisome position: 96.29

GC content: 63.29

Gene sequence:

>1422_bases
ATGACGCTCTATGTGAATCTCGCCGAACTGCTCGGCACCCGCATCGAACAAGGCTTCTACCGCGCCGGCGACCGACTGCC
GTCGGTGCGCGCCTTGAGCGTCGAACACGGGGTCAGCCTGAGCACGGTGCAGCAGGCCTATCGGATGCTGGAAGACAGCG
GCCTGGCCACGCCGAAACCCAAGTCAGGGTACTTCGTGCCGGTCGGTCGCGAGTTGCCGGAACTGCCGGCAGTCGGGCGT
CCGGCGCAACGGCCGGTGGAAATTTCCCAGTGGGATCAGGTGCTGGAACTGATTCGCGCCGTGCCGCGCAAGGACGTGGT
GCAGCTGGGTCGCGGCATGCCGGACATCTCGTCGCCGACGATGAAACCGCTGCTGCGTGGGCTGGCCCGTATCAGCCGCC
GTCAGGACATGCCCGGTCTGTATTACGACAACATCCACGGCACCCTCGAACTGCGCGAACAGATTGCCCGACTGATGCTC
GATTCCGGCTGCCAGTTGAGCGCCAGCGATCTGGTGGTCACCACCGGTTGCCATGAAGCGCTGTCCACCAGCATCCACGC
GATCTGCGAACCCGGTGACATCGTCGCGGTGGATTCGCCGAGCTTTCACGGCGCCATGCAGACCCTCAAAGGGCTGGGCA
TGAAAGCCCTGGAAATCCCCACCGACCCGCTCACCGGCATCAGCCTCGAAGCCCTGGAACTGGCACTGGAACAATGGCCG
ATCAAGGTCATCCAGCTCACGCCCAACTGCAACAACCCGCTCGGCTACATCATGCCGGAGTCGCGCAAACGCGCCCTGCT
CAACCTGGCCCAGCGCTTCGACGTGGCGATCATCGAGGACGACGTGTATGGCGAACTGGCCTACACCTACCCGCGTCCGC
GCACGATCAAATCCTTCGACGAAGATGGTCGTGTGTTGCTGTGCAGTTCGTTCTCCAAGACCCTCGCGCCGGGGCTGCGC
ATCGGCTGGGTCGCGCCGGGTCGTTATCTTGAGCGGGTGCTGCACATGAAATACATCAGCACCGGTTCCACCGCGCCCCA
GCCGCAGATTGCCATCGCCGAATTTCTCAAGTCCGGACACTTCGAACCGCATTTGCGGCGGATGCGCACGCAATACCAGC
GCAACCGCGACGTAATGATCGACTGGGTGACCCGCTACTTCCCGGCCGGCACCCGCGCCAGCCGCCCGCAGGGCAGCTTC
ATGCTCTGGGTCGAATTGCCGGACGGTTTCGATACGCTGAAACTGAATCGTGCGCTGCACGATCAGGGCGTACAGATTGC
CGTCGGCAGCATCTTTTCCGCCTCGGGCAAGTACCGCAATTGCCTGCGCATGAACTACGCTGCCAAACCGACACCGCTGA
TCGAAGAAGCGGTGCGCAAGGTCGGTGCGGCAGCGATCAGACTGCTGGCCGAGGCCGACTGA

Upstream 100 bases:

>100_bases
CTGTATTATTTCCATACAGATTTGCTGTCTCTGCGACTGAATTGTCGATTTACGCCACATCTGTACTGGTTTAACGAATC
ATCTGCATCGAGGCAGTGCC

Downstream 100 bases:

>100_bases
CTTTTACCGAGCAAAAAGCGTCCATATGCCCAACTCTGCCGCCAACCGGAACGATCCCACGTGAGTTTCAGACAGCCCCT
ACTCGCTCTGCTGCTACTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTLYVNLAELLGTRIEQGFYRAGDRLPSVRALSVEHGVSLSTVQQAYRMLEDSGLATPKPKSGYFVPVGRELPELPAVGR
PAQRPVEISQWDQVLELIRAVPRKDVVQLGRGMPDISSPTMKPLLRGLARISRRQDMPGLYYDNIHGTLELREQIARLML
DSGCQLSASDLVVTTGCHEALSTSIHAICEPGDIVAVDSPSFHGAMQTLKGLGMKALEIPTDPLTGISLEALELALEQWP
IKVIQLTPNCNNPLGYIMPESRKRALLNLAQRFDVAIIEDDVYGELAYTYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLR
IGWVAPGRYLERVLHMKYISTGSTAPQPQIAIAEFLKSGHFEPHLRRMRTQYQRNRDVMIDWVTRYFPAGTRASRPQGSF
MLWVELPDGFDTLKLNRALHDQGVQIAVGSIFSASGKYRNCLRMNYAAKPTPLIEEAVRKVGAAAIRLLAEAD

Sequences:

>Translated_473_residues
MTLYVNLAELLGTRIEQGFYRAGDRLPSVRALSVEHGVSLSTVQQAYRMLEDSGLATPKPKSGYFVPVGRELPELPAVGR
PAQRPVEISQWDQVLELIRAVPRKDVVQLGRGMPDISSPTMKPLLRGLARISRRQDMPGLYYDNIHGTLELREQIARLML
DSGCQLSASDLVVTTGCHEALSTSIHAICEPGDIVAVDSPSFHGAMQTLKGLGMKALEIPTDPLTGISLEALELALEQWP
IKVIQLTPNCNNPLGYIMPESRKRALLNLAQRFDVAIIEDDVYGELAYTYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLR
IGWVAPGRYLERVLHMKYISTGSTAPQPQIAIAEFLKSGHFEPHLRRMRTQYQRNRDVMIDWVTRYFPAGTRASRPQGSF
MLWVELPDGFDTLKLNRALHDQGVQIAVGSIFSASGKYRNCLRMNYAAKPTPLIEEAVRKVGAAAIRLLAEAD
>Mature_472_residues
TLYVNLAELLGTRIEQGFYRAGDRLPSVRALSVEHGVSLSTVQQAYRMLEDSGLATPKPKSGYFVPVGRELPELPAVGRP
AQRPVEISQWDQVLELIRAVPRKDVVQLGRGMPDISSPTMKPLLRGLARISRRQDMPGLYYDNIHGTLELREQIARLMLD
SGCQLSASDLVVTTGCHEALSTSIHAICEPGDIVAVDSPSFHGAMQTLKGLGMKALEIPTDPLTGISLEALELALEQWPI
KVIQLTPNCNNPLGYIMPESRKRALLNLAQRFDVAIIEDDVYGELAYTYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLRI
GWVAPGRYLERVLHMKYISTGSTAPQPQIAIAEFLKSGHFEPHLRRMRTQYQRNRDVMIDWVTRYFPAGTRASRPQGSFM
LWVELPDGFDTLKLNRALHDQGVQIAVGSIFSASGKYRNCLRMNYAAKPTPLIEEAVRKVGAAAIRLLAEAD

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=274, Percent_Identity=29.5620437956204, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI33469970, Length=274, Percent_Identity=29.5620437956204, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI4507369, Length=181, Percent_Identity=25.9668508287293, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=56.5031982942431, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1787710, Length=463, Percent_Identity=35.85313174946, Blast_Score=300, Evalue=2e-82,
Organism=Escherichia coli, GI1788722, Length=349, Percent_Identity=23.7822349570201, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6321236, Length=253, Percent_Identity=27.2727272727273, Blast_Score=97, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6321929, Length=469, Percent_Identity=23.6673773987207, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6321000, Length=246, Percent_Identity=26.0162601626016, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322401, Length=332, Percent_Identity=23.7951807228916, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356535, Length=403, Percent_Identity=23.5732009925558, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28573069, Length=318, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24646114, Length=318, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573067, Length=318, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573065, Length=318, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52559; Mature: 52428

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYVNLAELLGTRIEQGFYRAGDRLPSVRALSVEHGVSLSTVQQAYRMLEDSGLATPKP
CEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCC
KSGYFVPVGRELPELPAVGRPAQRPVEISQWDQVLELIRAVPRKDVVQLGRGMPDISSPT
CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHH
MKPLLRGLARISRRQDMPGLYYDNIHGTLELREQIARLMLDSGCQLSASDLVVTTGCHEA
HHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHH
LSTSIHAICEPGDIVAVDSPSFHGAMQTLKGLGMKALEIPTDPLTGISLEALELALEQWP
HHHHHHHEECCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCC
IKVIQLTPNCNNPLGYIMPESRKRALLNLAQRFDVAIIEDDVYGELAYTYPRPRTIKSFD
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCCCCCCC
EDGRVLLCSSFSKTLAPGLRIGWVAPGRYLERVLHMKYISTGSTAPQPQIAIAEFLKSGH
CCCCEEEECCCHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
FEPHLRRMRTQYQRNRDVMIDWVTRYFPAGTRASRPQGSFMLWVELPDGFDTLKLNRALH
CCHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
DQGVQIAVGSIFSASGKYRNCLRMNYAAKPTPLIEEAVRKVGAAAIRLLAEAD
HCCCEEEECHHHHCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLYVNLAELLGTRIEQGFYRAGDRLPSVRALSVEHGVSLSTVQQAYRMLEDSGLATPKP
EEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCC
KSGYFVPVGRELPELPAVGRPAQRPVEISQWDQVLELIRAVPRKDVVQLGRGMPDISSPT
CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHH
MKPLLRGLARISRRQDMPGLYYDNIHGTLELREQIARLMLDSGCQLSASDLVVTTGCHEA
HHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHH
LSTSIHAICEPGDIVAVDSPSFHGAMQTLKGLGMKALEIPTDPLTGISLEALELALEQWP
HHHHHHHEECCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCC
IKVIQLTPNCNNPLGYIMPESRKRALLNLAQRFDVAIIEDDVYGELAYTYPRPRTIKSFD
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCCCCCCC
EDGRVLLCSSFSKTLAPGLRIGWVAPGRYLERVLHMKYISTGSTAPQPQIAIAEFLKSGH
CCCCEEEECCCHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
FEPHLRRMRTQYQRNRDVMIDWVTRYFPAGTRASRPQGSFMLWVELPDGFDTLKLNRALH
CCHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
DQGVQIAVGSIFSASGKYRNCLRMNYAAKPTPLIEEAVRKVGAAAIRLLAEAD
HCCCEEEECHHHHCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]