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The map label for this gene is yggS [C]

Identifier: 77461540

GI number: 77461540

Start: 5983259

End: 5983945

Strand: Direct

Name: yggS [C]

Synonym: Pfl01_5319

Alternate gene names: 77461540

Gene position: 5983259-5983945 (Clockwise)

Preceding gene: 77461538

Following gene: 77461541

Centisome position: 92.93

GC content: 62.74

Gene sequence:

>687_bases
ATGTCCACGATAGCAGACAACATTCTCCAGGTTAGTTCGCGTATTCATGCCGCCACCGCTGCCGCCGGACGCGATGAAAA
CAGCGTCCAGCTGCTGGCCGTGAGCAAGACCAAACCGTCCGAAGCCCTGCGTGAAGCGTATGCCGCCGGCCTGCGTGATT
TCGGCGAGAACTATCTACAGGAAGCGTTGGGCAAACAGCTCGAACTGGCCGACCTGCCCTTGATCTGGCACTTCATCGGC
CCCATTCAGTCGAACAAGACCCGCTCGATTGCCGAGCATTTCGCCTGGGTGCACTCCGTGGATCGTCTGAAAATCGCCCA
ACGCCTGTCCGAACAACGCCCGGCGGATCTGCCGCCACTGAACATCTGCATTCAGGTCAACGTCAGCGGTGAAGCCAGCA
AGTCCGGCTGCACCCCGCAAGACCTGCCGGCCCTGGCCCAGGCCATCAGCGCCCTGCCGCGCCTGAAGCTGCGCGGGCTG
ATGGCAATTCCCGAGCCGACCGAAGATCGCGCCGAGCAGGACGCGGCATTCGCCGCCGTTCAGAAGTTGCAGGCCGGCCT
CGATCTGCCGCTCGACACACTTTCCATGGGCATGAGCCACGACCTCGAGTCGGCCATTGCCCAGGGCGCGACCTGGGTCC
GTATCGGTACGGCCCTGTTCGGCGCCCGTGACTATTCCCAATCTTGA

Upstream 100 bases:

>100_bases
GCGCCCTGTTTGGCGCTGAAGGCCAGCAGTTCAGTGATATCCATAGCGTCCCTCAATTCCAGTAGAATGCCGCGAACCTT
CAGACCGCTGGCGCCTCTTG

Downstream 100 bases:

>100_bases
CCATTTCCAGATAAGGACCTGACATGAGCAACACACGTATTGCCTTTATCGGTGCCGGCAACATGGCCGCCAGCCTGATC
GGCGGCCTGCGGGCCAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSTIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQEALGKQLELADLPLIWHFIG
PIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPLNICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGL
MAIPEPTEDRAEQDAAFAAVQKLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYSQS

Sequences:

>Translated_228_residues
MSTIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQEALGKQLELADLPLIWHFIG
PIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPLNICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGL
MAIPEPTEDRAEQDAAFAAVQKLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYSQS
>Mature_227_residues
STIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQEALGKQLELADLPLIWHFIGP
IQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPLNICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGLM
AIPEPTEDRAEQDAAFAAVQKLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYSQS

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=236, Percent_Identity=38.9830508474576, Blast_Score=132, Evalue=3e-31,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=54.0772532188841, Blast_Score=243, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17533025, Length=234, Percent_Identity=37.6068376068376, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=222, Percent_Identity=35.5855855855856, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=42.1800947867299, Blast_Score=134, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24589; Mature: 24458

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EALGKQLELADLPLIWHFIGPIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPL
HHHCCCCCHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGLMAIPEPTEDRAEQDAAFAAV
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QKLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYSQS
HHHHHCCCCCHHHHHHCCCHHHHHHHHCCCHHEEHHHHHHHCCCCCCC
>Mature Secondary Structure 
STIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQ
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EALGKQLELADLPLIWHFIGPIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPL
HHHCCCCCHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGLMAIPEPTEDRAEQDAAFAAV
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QKLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYSQS
HHHHHCCCCCHHHHHHCCCHHHHHHHHCCCHHEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]