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The map label for this gene is yccS [H]

Identifier: 77461471

GI number: 77461471

Start: 5911218

End: 5913401

Strand: Direct

Name: yccS [H]

Synonym: Pfl01_5250

Alternate gene names: 77461471

Gene position: 5911218-5913401 (Clockwise)

Preceding gene: 77461470

Following gene: 77461473

Centisome position: 91.81

GC content: 63.28

Gene sequence:

>2184_bases
ATGTCCTCGACCTCGTTTCGTCAGTCTTTGCGGCGCCTGTGGGCGCTGGATAAATTCAGCTACAGCGTGCGGGTGTTCAT
CGCCCTGACCGGCAGCATGGCGCTGTGCTGGTATCAGGATGAGATGGGGCTGCTGATCCCGCTGTTCCTCGGGATTATCG
CCAGCGCCCTGGCCGAGACCGACGACAGTTGGCAGGGCCGCCTCAACGCACTGGCGGTGACGCTGGTGTGTTTCAGTGTC
GCGGCGCTGTCCGTGGAATTGCTGTTCCCCTACCCCATCGTGTTCGTCATCGCTTTGGCACTGGCCAGTTTCGGCCTGAC
CATGCTCGGTGCGCTCGGCGAGCGTTATGGTGCGATTGCTTCGGCGACCCTGATTCTTTCCGTCTACACCATGATCGGCG
TGGATCAGCGCGGCGGCGCGGTCACGGATTTCTGGCATGAGCCTATGCTGCTGGTGGCCGGCGCCGCATGGTACGGCCTG
CTGTCGGTGCTGTGGCAGGCGATGTTTTCCAATCAGCCGGTGCAGCAGAGTCTGGCGCGGCTGTTCCGCGAACTCGGCTA
TTACCTGAAGCTGAAATCCTCGCTGTTCGAGCCGATCCGGCAGATGGACGTCGAAGCACGGCGACTGGAACTGGCCCAGC
AAAACGGCCGGGTCGTCGCAGCCCTGAACAGCGCCAAGGAAATCATCCTGCACCGGGTCGGCAACGGTCGCCCGGGCTCG
AAAGTCAGCCGTTACCTGAAGCTGTACTTCCTGGCGCAAGACATCCACGAACGCGCCAGTTCTTCCCACTACCCCTACAA
CGCCCTGGCCGATGCGTTTTTCCACAGCGATGTCTTGTTCCGCTGCCAGCGCCTGCTGCGCCAGCAAGGCAAGGCCTGTC
GGGCGCTGGCCGAATCGATCCAGATGCGTCAGCCGTTCATCTACGACGCGAGTTTCGCCGAAGCCCTGAGCGACCTGCAC
GCCTCCCTCGAACACCTGCGCATCCAGAGCAACCCGGCCTGGCGCGGGCTGCTGCGTTCATTGCGCGCACTGGCGGCCAA
CCTCGGCACCCTCGACCGCTTGCTCAGCGATGCGAGCAACCCCGACGCCTTGGCCGATGCCACCGACAGCAGCCTGCTCG
ACCGCTCGCCGCGCAACTTCAAGGACGTGTGGATTCGCCTGCGCACCCAGCTGACGCCGACCTCGCTGCTGTTCCGTCAC
GCCCTGCGCTTGCCGCTGGCGTTGAGCATCGGCTACGGCATGGTGCATTTGATTCACCCGTCGCAGGGTTACTGGATCAT
CCTCACCACGCTGTTCGTCTGCCAGCCGAACTACGGCGCCACTCGCCGCAAACTCGGCCAGCGTATCTTCGGCACCGCCA
TCGGTCTGACGATTGCCTGGGCGCTGTTCGATCTGTTCCCGAATCCGCTGGTGCAGTCGTGCTTCGCCATCGCCGCCGGC
GTGGTGTTCTTTACTAACCGCACCACTCGCTACACCGTGGCCACCGCCGCGATCACGATCATGGTGCTGTTCTGCTTCAA
CCAGGTCGGTGACGGCTACGGGCTGTTTGTGCCGCGGTTGTTCGATACCTTGCTCGGCAGCCTGATCGCCGGGCTGGCGG
TGTTCCTGTTCCTGCCGGACTGGCAGGGTCGGCGTCTGAATAAGGTGCTGGCCAACACCCTCACCTGCAACAGCATTTAC
CTGCGCCAGATCATGCAGCAATACGCCGCCGGCAAGAGCGACGACCTTGCCTATCGCCTGGCCCGGCGCAACGCACACAA
CGCCGACGCGGCACTGTCGACCACGCTGGCGAACATGCTGATGGAGCCGGGGCATTTCCGGAAGGAAGCCGACGTGGGCT
TCCGCTTCCTGGTGCTGTCGCACACCTTGCTCAGCTATCTGTCAGGCCTCGGCGCGCACCGGGAAACCCAACTGCCGGCG
GAAGTGCGCGAACATCTGATCGACGGCGCCGGGGTGAGTCTGGCGGCGAGCATCGATGAAATCGCCCAGGGTCTGGCGAG
CAAACAGCCGATTGCGATTCAAAGTGATGAGGAAGAAGCGCTGGCCAATGAGCTTGAGCAGATGCCGGACGAAATCGACG
AAGGCCAGCGGCTGGTGCAGACGCAACTGGCGTTGATCTGCCGCCAGCTCGGCCCGTTGCGCACGCTGGCGGCGCACCTG
ATCAAAGACACAGCCGAAGATTGA

Upstream 100 bases:

>100_bases
GTAGGGAACACTTTTTGCTGTCAGATGTGATCGGCGCCATTGCGTCGGCGTCATTACTGGCTCAATTTAGCGGCATCGCC
TCGGAAGGCCTTCGCACTTC

Downstream 100 bases:

>100_bases
GCCGCCTCACATGCCGTGTTGCCTGAGCAGCTTGTCATAGCTGCCATCGGCCTTCATCGATGCAATCGCCTTGTCGAACC
CGGCCACGATCTGTTCGTGC

Product: intergral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 726

Protein sequence:

>727_residues
MSSTSFRQSLRRLWALDKFSYSVRVFIALTGSMALCWYQDEMGLLIPLFLGIIASALAETDDSWQGRLNALAVTLVCFSV
AALSVELLFPYPIVFVIALALASFGLTMLGALGERYGAIASATLILSVYTMIGVDQRGGAVTDFWHEPMLLVAGAAWYGL
LSVLWQAMFSNQPVQQSLARLFRELGYYLKLKSSLFEPIRQMDVEARRLELAQQNGRVVAALNSAKEIILHRVGNGRPGS
KVSRYLKLYFLAQDIHERASSSHYPYNALADAFFHSDVLFRCQRLLRQQGKACRALAESIQMRQPFIYDASFAEALSDLH
ASLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLLSDASNPDALADATDSSLLDRSPRNFKDVWIRLRTQLTPTSLLFRH
ALRLPLALSIGYGMVHLIHPSQGYWIILTTLFVCQPNYGATRRKLGQRIFGTAIGLTIAWALFDLFPNPLVQSCFAIAAG
VVFFTNRTTRYTVATAAITIMVLFCFNQVGDGYGLFVPRLFDTLLGSLIAGLAVFLFLPDWQGRRLNKVLANTLTCNSIY
LRQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANMLMEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRETQLPA
EVREHLIDGAGVSLAASIDEIAQGLASKQPIAIQSDEEEALANELEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHL
IKDTAED

Sequences:

>Translated_727_residues
MSSTSFRQSLRRLWALDKFSYSVRVFIALTGSMALCWYQDEMGLLIPLFLGIIASALAETDDSWQGRLNALAVTLVCFSV
AALSVELLFPYPIVFVIALALASFGLTMLGALGERYGAIASATLILSVYTMIGVDQRGGAVTDFWHEPMLLVAGAAWYGL
LSVLWQAMFSNQPVQQSLARLFRELGYYLKLKSSLFEPIRQMDVEARRLELAQQNGRVVAALNSAKEIILHRVGNGRPGS
KVSRYLKLYFLAQDIHERASSSHYPYNALADAFFHSDVLFRCQRLLRQQGKACRALAESIQMRQPFIYDASFAEALSDLH
ASLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLLSDASNPDALADATDSSLLDRSPRNFKDVWIRLRTQLTPTSLLFRH
ALRLPLALSIGYGMVHLIHPSQGYWIILTTLFVCQPNYGATRRKLGQRIFGTAIGLTIAWALFDLFPNPLVQSCFAIAAG
VVFFTNRTTRYTVATAAITIMVLFCFNQVGDGYGLFVPRLFDTLLGSLIAGLAVFLFLPDWQGRRLNKVLANTLTCNSIY
LRQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANMLMEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRETQLPA
EVREHLIDGAGVSLAASIDEIAQGLASKQPIAIQSDEEEALANELEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHL
IKDTAED
>Mature_726_residues
SSTSFRQSLRRLWALDKFSYSVRVFIALTGSMALCWYQDEMGLLIPLFLGIIASALAETDDSWQGRLNALAVTLVCFSVA
ALSVELLFPYPIVFVIALALASFGLTMLGALGERYGAIASATLILSVYTMIGVDQRGGAVTDFWHEPMLLVAGAAWYGLL
SVLWQAMFSNQPVQQSLARLFRELGYYLKLKSSLFEPIRQMDVEARRLELAQQNGRVVAALNSAKEIILHRVGNGRPGSK
VSRYLKLYFLAQDIHERASSSHYPYNALADAFFHSDVLFRCQRLLRQQGKACRALAESIQMRQPFIYDASFAEALSDLHA
SLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLLSDASNPDALADATDSSLLDRSPRNFKDVWIRLRTQLTPTSLLFRHA
LRLPLALSIGYGMVHLIHPSQGYWIILTTLFVCQPNYGATRRKLGQRIFGTAIGLTIAWALFDLFPNPLVQSCFAIAAGV
VFFTNRTTRYTVATAAITIMVLFCFNQVGDGYGLFVPRLFDTLLGSLIAGLAVFLFLPDWQGRRLNKVLANTLTCNSIYL
RQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANMLMEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRETQLPAE
VREHLIDGAGVSLAASIDEIAQGLASKQPIAIQSDEEEALANELEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHLI
KDTAED

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=696, Percent_Identity=41.235632183908, Blast_Score=497, Evalue=1e-141,
Organism=Escherichia coli, GI87082248, Length=621, Percent_Identity=23.6714975845411, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80640; Mature: 80509

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTSFRQSLRRLWALDKFSYSVRVFIALTGSMALCWYQDEMGLLIPLFLGIIASALAET
CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHCC
DDSWQGRLNALAVTLVCFSVAALSVELLFPYPIVFVIALALASFGLTMLGALGERYGAIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SATLILSVYTMIGVDQRGGAVTDFWHEPMLLVAGAAWYGLLSVLWQAMFSNQPVQQSLAR
HHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LFRELGYYLKLKSSLFEPIRQMDVEARRLELAQQNGRVVAALNSAKEIILHRVGNGRPGS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCHH
KVSRYLKLYFLAQDIHERASSSHYPYNALADAFFHSDVLFRCQRLLRQQGKACRALAESI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
QMRQPFIYDASFAEALSDLHASLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLLSDASN
HHCCCCEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDALADATDSSLLDRSPRNFKDVWIRLRTQLTPTSLLFRHALRLPLALSIGYGMVHLIHP
CCHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHEECCCCEEEEEEC
SQGYWIILTTLFVCQPNYGATRRKLGQRIFGTAIGLTIAWALFDLFPNPLVQSCFAIAAG
CCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VVFFTNRTTRYTVATAAITIMVLFCFNQVGDGYGLFVPRLFDTLLGSLIAGLAVFLFLPD
HHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
WQGRRLNKVLANTLTCNSIYLRQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANML
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
MEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRETQLPAEVREHLIDGAGVSLAASIDE
HCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
IAQGLASKQPIAIQSDEEEALANELEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHL
HHHHHCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
IKDTAED
HHHCCCC
>Mature Secondary Structure 
SSTSFRQSLRRLWALDKFSYSVRVFIALTGSMALCWYQDEMGLLIPLFLGIIASALAET
CCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHCC
DDSWQGRLNALAVTLVCFSVAALSVELLFPYPIVFVIALALASFGLTMLGALGERYGAIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SATLILSVYTMIGVDQRGGAVTDFWHEPMLLVAGAAWYGLLSVLWQAMFSNQPVQQSLAR
HHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LFRELGYYLKLKSSLFEPIRQMDVEARRLELAQQNGRVVAALNSAKEIILHRVGNGRPGS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCHH
KVSRYLKLYFLAQDIHERASSSHYPYNALADAFFHSDVLFRCQRLLRQQGKACRALAESI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
QMRQPFIYDASFAEALSDLHASLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLLSDASN
HHCCCCEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDALADATDSSLLDRSPRNFKDVWIRLRTQLTPTSLLFRHALRLPLALSIGYGMVHLIHP
CCHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHEECCCCEEEEEEC
SQGYWIILTTLFVCQPNYGATRRKLGQRIFGTAIGLTIAWALFDLFPNPLVQSCFAIAAG
CCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VVFFTNRTTRYTVATAAITIMVLFCFNQVGDGYGLFVPRLFDTLLGSLIAGLAVFLFLPD
HHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
WQGRRLNKVLANTLTCNSIYLRQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANML
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
MEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRETQLPAEVREHLIDGAGVSLAASIDE
HCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
IAQGLASKQPIAIQSDEEEALANELEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHL
HHHHHCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
IKDTAED
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]