| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is creD [H]
Identifier: 77461414
GI number: 77461414
Start: 5841147
End: 5842517
Strand: Reverse
Name: creD [H]
Synonym: Pfl01_5193
Alternate gene names: 77461414
Gene position: 5842517-5841147 (Counterclockwise)
Preceding gene: 77461416
Following gene: 77461405
Centisome position: 90.74
GC content: 59.23
Gene sequence:
>1371_bases ATGAACCGAAATCTGACATTCAAACTCGGGGCCATTGCCCTGTTGATTCTGGTATTGCTGGTGCCGCTGTTGATGATCGA CGGCATCATCGACGATCGCCAGCAACTGCGTGACGGTGTGCTCGAAGACATCGCCAGAAGCTCAAGCTACAGCCAGCAAC TCAGCGGGCCGGTGATGGTTGTGCCGTATCGCAAAGTGGTGCGCACCTGGAAGACCAAAGAGAAGAGCGACGAGCGCTAT CAGGAAATCGGAGAAGAGCGCGGACGCCTGTATTTCCTGCCGGAGCGTTTTGAACTCGATGGCCAGGTACAGACCGAACT GCGCGCCCGGGGCATTTACGAGGCGCGGCTGTTCCATGCCGATAACCGTATCAGTGGCCATTTCTCGCTGCCGGCGCAGT TGGGGATCAAGGAAGATTTTGCCGATTACACCTTCGATGCGCCGTTCCTGGCGGTCGGCATCAGCGACATTCGCGGGATC GAAAATGCCCTGAAGCTGGAGCTGGGCGCGCAACGCCTGGACTTCGTGCCCGGTACTCAAGTCGGTTGGCTGGGCGAGGG TGTGCGAGTGACGCTGCCGGCGCTGGACACCAGCAAGACCACGGAACTGGCCTTCGGCTTCGACCTGCGTCTGCAAGGCA CCGGCTCGTTGCAGGTGCTGCCGGTGGGCAAGACCAGTCGCGTGAACCTCGCCGCCAACTGGCCGCACCCAAGCTTCATC GGTAACTTCCTGCCGGCCAGGCGCGAGATCAACGATCAGGGTTTTACCGCTGACTGGCAGACCTCGTTTTTCTCCACCAA TTTGCAAGAAGCGATGAGCCGTTGTGTGTCGGGCAATGATTGCGAGGCGTTCAACGGGCGCAGTTTCGGCGTGAGCTTCA TCGATCCGGTGGATCAGTACCTGAAGAGTGACCGGGCGATCAAATATGCGCTGCTGTTCATCGTCCTGACGTTCGCCGGT TTCTTCCTGTTCGAAGTGCTGAAAAGCCTGGCGGTGCACCCGGTGCAATACGCGTTGGTGGGCGTGGCGCTGGCGTTCTT TTATCTGTTGCTGCTGTCGTTGTCGGAGCACATCGGGTTTGCCCTGGCGTATCTGTTGTCGGCCAGCGGTTGTGTGCTGT TGATCGGGTTCTATGTCTGCCACGTGCTGCGCAGCGTGCGGCATGGCTTGAGTTTTTCAGCGGGGCTGGCGGCGTTGTAC GGTTTGCTCTACGGCTTGCTGAGCGCCGAGGATTACGCGCTGCTGATGGGTTCGCTGCTGCTGTTCGGTCTGCTCGGTGT GTTCATGGTGCTGACCCGCAATCTGGACTGGTACGGGATCGGGCAGAAACCGGCCAAACCGCTGCAATTCGATATCGGAG CGGTGCAATGA
Upstream 100 bases:
>100_bases AAGCGTTTTACAGGTATTTCCACGTAAAGCCCACACAACCTCCATAACAAATCCATACAGCGTTTGCAGACTCGCTCCAT TCCAACAAGGGAGCGTTCCG
Downstream 100 bases:
>100_bases GCCGGTTTGTGGGATTGCGTGAGGAGCAGCGGGAGGCCGAGGTGTTGATGACGCTGATCTTTGCCTCGTTGCCTCCCGCC CGGTGCGTCAAGCCTTCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MNRNLTFKLGAIALLILVLLVPLLMIDGIIDDRQQLRDGVLEDIARSSSYSQQLSGPVMVVPYRKVVRTWKTKEKSDERY QEIGEERGRLYFLPERFELDGQVQTELRARGIYEARLFHADNRISGHFSLPAQLGIKEDFADYTFDAPFLAVGISDIRGI ENALKLELGAQRLDFVPGTQVGWLGEGVRVTLPALDTSKTTELAFGFDLRLQGTGSLQVLPVGKTSRVNLAANWPHPSFI GNFLPARREINDQGFTADWQTSFFSTNLQEAMSRCVSGNDCEAFNGRSFGVSFIDPVDQYLKSDRAIKYALLFIVLTFAG FFLFEVLKSLAVHPVQYALVGVALAFFYLLLLSLSEHIGFALAYLLSASGCVLLIGFYVCHVLRSVRHGLSFSAGLAALY GLLYGLLSAEDYALLMGSLLLFGLLGVFMVLTRNLDWYGIGQKPAKPLQFDIGAVQ
Sequences:
>Translated_456_residues MNRNLTFKLGAIALLILVLLVPLLMIDGIIDDRQQLRDGVLEDIARSSSYSQQLSGPVMVVPYRKVVRTWKTKEKSDERY QEIGEERGRLYFLPERFELDGQVQTELRARGIYEARLFHADNRISGHFSLPAQLGIKEDFADYTFDAPFLAVGISDIRGI ENALKLELGAQRLDFVPGTQVGWLGEGVRVTLPALDTSKTTELAFGFDLRLQGTGSLQVLPVGKTSRVNLAANWPHPSFI GNFLPARREINDQGFTADWQTSFFSTNLQEAMSRCVSGNDCEAFNGRSFGVSFIDPVDQYLKSDRAIKYALLFIVLTFAG FFLFEVLKSLAVHPVQYALVGVALAFFYLLLLSLSEHIGFALAYLLSASGCVLLIGFYVCHVLRSVRHGLSFSAGLAALY GLLYGLLSAEDYALLMGSLLLFGLLGVFMVLTRNLDWYGIGQKPAKPLQFDIGAVQ >Mature_456_residues MNRNLTFKLGAIALLILVLLVPLLMIDGIIDDRQQLRDGVLEDIARSSSYSQQLSGPVMVVPYRKVVRTWKTKEKSDERY QEIGEERGRLYFLPERFELDGQVQTELRARGIYEARLFHADNRISGHFSLPAQLGIKEDFADYTFDAPFLAVGISDIRGI ENALKLELGAQRLDFVPGTQVGWLGEGVRVTLPALDTSKTTELAFGFDLRLQGTGSLQVLPVGKTSRVNLAANWPHPSFI GNFLPARREINDQGFTADWQTSFFSTNLQEAMSRCVSGNDCEAFNGRSFGVSFIDPVDQYLKSDRAIKYALLFIVLTFAG FFLFEVLKSLAVHPVQYALVGVALAFFYLLLLSLSEHIGFALAYLLSASGCVLLIGFYVCHVLRSVRHGLSFSAGLAALY GLLYGLLSAEDYALLMGSLLLFGLLGVFMVLTRNLDWYGIGQKPAKPLQFDIGAVQ
Specific function: Unknown
COG id: COG4452
COG function: function code V; Inner membrane protein involved in colicin E2 resistance
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790862, Length=412, Percent_Identity=39.0776699029126, Blast_Score=282, Evalue=4e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010364 [H]
Pfam domain/function: PF06123 CreD [H]
EC number: NA
Molecular weight: Translated: 50609; Mature: 50609
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRNLTFKLGAIALLILVLLVPLLMIDGIIDDRQQLRDGVLEDIARSSSYSQQLSGPVMV CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEE VPYRKVVRTWKTKEKSDERYQEIGEERGRLYFLPERFELDGQVQTELRARGIYEARLFHA ECHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCHHCCCCHHHHHHHHCCCHHHHEEEC DNRISGHFSLPAQLGIKEDFADYTFDAPFLAVGISDIRGIENALKLELGAQRLDFVPGTQ CCCCCCEECCCHHCCCCHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHCHHHHCCCCCCC VGWLGEGVRVTLPALDTSKTTELAFGFDLRLQGTGSLQVLPVGKTSRVNLAANWPHPSFI CCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCHHHH GNFLPARREINDQGFTADWQTSFFSTNLQEAMSRCVSGNDCEAFNGRSFGVSFIDPVDQY HHHCCHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH LKSDRAIKYALLFIVLTFAGFFLFEVLKSLAVHPVQYALVGVALAFFYLLLLSLSEHIGF HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAYLLSASGCVLLIGFYVCHVLRSVRHGLSFSAGLAALYGLLYGLLSAEDYALLMGSLL HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LFGLLGVFMVLTRNLDWYGIGQKPAKPLQFDIGAVQ HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MNRNLTFKLGAIALLILVLLVPLLMIDGIIDDRQQLRDGVLEDIARSSSYSQQLSGPVMV CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEE VPYRKVVRTWKTKEKSDERYQEIGEERGRLYFLPERFELDGQVQTELRARGIYEARLFHA ECHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCHHCCCCHHHHHHHHCCCHHHHEEEC DNRISGHFSLPAQLGIKEDFADYTFDAPFLAVGISDIRGIENALKLELGAQRLDFVPGTQ CCCCCCEECCCHHCCCCHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHCHHHHCCCCCCC VGWLGEGVRVTLPALDTSKTTELAFGFDLRLQGTGSLQVLPVGKTSRVNLAANWPHPSFI CCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCHHHH GNFLPARREINDQGFTADWQTSFFSTNLQEAMSRCVSGNDCEAFNGRSFGVSFIDPVDQY HHHCCHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH LKSDRAIKYALLFIVLTFAGFFLFEVLKSLAVHPVQYALVGVALAFFYLLLLSLSEHIGF HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAYLLSASGCVLLIGFYVCHVLRSVRHGLSFSAGLAALYGLLYGLLSAEDYALLMGSLL HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LFGLLGVFMVLTRNLDWYGIGQKPAKPLQFDIGAVQ HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2835585; 3531171; 7610040; 9278503; 2984198 [H]