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The map label for this gene is bcd [H]

Identifier: 77461388

GI number: 77461388

Start: 5809577

End: 5811373

Strand: Reverse

Name: bcd [H]

Synonym: Pfl01_5167

Alternate gene names: 77461388

Gene position: 5811373-5809577 (Counterclockwise)

Preceding gene: 77461389

Following gene: 77461387

Centisome position: 90.26

GC content: 61.66

Gene sequence:

>1797_bases
ATGCCCGAGTACAAAGCTCCGTTGCGCGATATGCGCTTTCTGATCGACCACGTCTTTGACTTCCACACTCAGTACGCGGC
TCTCGGCGCCCACGACGCCAGCCCGGACATGATCAACGCGATCCTCGACGAGGGCGCGAAGTTCTGTGAGAACGTTCTGG
CGCCGCTCAATCGCAGCGGCGATGAAGAGGGCTGCCATTTCGACAATGGCGTGGTGACAACGCCTACAGGCTTCAAGCAG
GCCTTCGCACAATACGTGGAAGGTGGCTGGCACGGTCTGGCGGCAGATCCGGCTTACGGTGGCCAGGGCCTGCCGAGTTC
GCTGGGGCTGGTGATCAGCGAAATGGTCGCCTCCAGCAACACCTCGTGGGGCATGTACCCGGGCCTGACCCATGGCGCCA
TGTCGGCGATCCACGCCCACGGCACCGACGAGCAGAAAAACACCTATCTGCGCAAACTTACTGCGGGCCAGTGGACCGGC
ACCATGTGCCTGACCGAAGCCCATTGCGGCACCGACCTGGGCATTATCAAGACCCGCGCGGTGCCGCAGGCCGACGGCAG
TTATGCAGTGACCGGCAGCAAGATTTTCATCTCCGCCGGCGAGCACGACATGAGTGACAACATCATTCATCTGGTGCTGG
CCAAACTGCCGGACGCACCGGCGGGCACCAAAGGCATTTCGCTGTTCATCGTGCCGAAATTTCTCCCGGACGCCTCCGGT
GAGGCGGGCGAGCGCAACGGCGTTTCCTGCGGCTCGATCGAACACAAAATGGGCATCAAGGCATCGGCCACCTGCGTGCT
GAACTTCGACGACGCCAAAGGTTTCCTGATCGGCGAGCCGAACAAAGGCCTGAATTGCATGTTCACCATGATGAACCACG
CGCGCCTCGGCACCGGGATGCAGGGCCTGTGTCTGGGCGAGGCAAGCTTCCAGGGCGCAATCAAATACGCCAACGACCGC
TTGCAGATGCGGGCCCTGACCGGTGCCAAGTCCCCGGACAAACCGGCCGACCCGATCATCGTCCATCCGGACGTGCGACG
CATGCTGCTGACCATGAAAGCCTTCAACGAAGGCAACCGCGCGCTGACTTATTTCACCGCGCAGATGCTCGATGTCGCGC
ACCTGAGCCCGGACGCCGAGGCGCGTCAGGAAGCCGAAGACCTGTTGGCGTTCCTGACGCCGATCTGCAAGGCGTTCATG
ACCGACACCGGCCTTGAGGTGACCAACCACGGCATGCAGGTGTTCGGTGGCCACGGATTTATCCGCGAGTGGGGCATGGA
ACAACTGGTTCGTGATTGCCGCATCGCGCCGATCTACGAGGGCACAAACGGCATTCAGGCGCTGGATCTACTCGGGCGCA
AGGTGCTGGGCAGCCAGGGAAAGCTGCTGCGCAACTTCACCAAAATCGTCCACAAGTTCTGCGCCGCCAACGCCGGGAAT
GCGCAGTTGGGCGGGTTTGTCGCGCAGCTTGATGGTCTCAATCAGCAGTGGGGCGAGCTGACCATGAAGGTCGGTATGGC
CGCGATGAAAAATCCGGATGAAGTCGGCGCCGCGTCGGTGGATTACCTGATGTACAGCGGTTACATCGTTCTCGGCTACC
TGTGGCTGCGCATGGCTCTGGTTGCCCAAGCGCAGCTGGAGTCGGGCGAGGGGGATGGCGATTTCTGCCAGGGCAAACTG
GCGACGTGCGAGTTTTACTTCAAGCGTCTGCTGCCGCGCACCGCTGCGCATCGTTCGGCGATCGAGGCGGGTAGCGATTG
CCTGATGAAACTGCCGGCGCAGTTGTTCGCGCTGTAA

Upstream 100 bases:

>100_bases
CGCAGGTTGAGTGATGACGGCGCATTCAGCGTCTGGACAGTGATTGTGGGGCAGGGTGACCGGCAGTAGGTTGAAGCAAT
CTGCTGAAGGAGAAGCCACC

Downstream 100 bases:

>100_bases
CACGCCACTGTTAAACAAAAGAGCCCGCTGATTGCGGGCTTCTTTATGGTTGATTGCTGGTGACTAAAAATAACAAATCA
GTCATCGCCTGACCCTATGT

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 598; Mature: 597

Protein sequence:

>598_residues
MPEYKAPLRDMRFLIDHVFDFHTQYAALGAHDASPDMINAILDEGAKFCENVLAPLNRSGDEEGCHFDNGVVTTPTGFKQ
AFAQYVEGGWHGLAADPAYGGQGLPSSLGLVISEMVASSNTSWGMYPGLTHGAMSAIHAHGTDEQKNTYLRKLTAGQWTG
TMCLTEAHCGTDLGIIKTRAVPQADGSYAVTGSKIFISAGEHDMSDNIIHLVLAKLPDAPAGTKGISLFIVPKFLPDASG
EAGERNGVSCGSIEHKMGIKASATCVLNFDDAKGFLIGEPNKGLNCMFTMMNHARLGTGMQGLCLGEASFQGAIKYANDR
LQMRALTGAKSPDKPADPIIVHPDVRRMLLTMKAFNEGNRALTYFTAQMLDVAHLSPDAEARQEAEDLLAFLTPICKAFM
TDTGLEVTNHGMQVFGGHGFIREWGMEQLVRDCRIAPIYEGTNGIQALDLLGRKVLGSQGKLLRNFTKIVHKFCAANAGN
AQLGGFVAQLDGLNQQWGELTMKVGMAAMKNPDEVGAASVDYLMYSGYIVLGYLWLRMALVAQAQLESGEGDGDFCQGKL
ATCEFYFKRLLPRTAAHRSAIEAGSDCLMKLPAQLFAL

Sequences:

>Translated_598_residues
MPEYKAPLRDMRFLIDHVFDFHTQYAALGAHDASPDMINAILDEGAKFCENVLAPLNRSGDEEGCHFDNGVVTTPTGFKQ
AFAQYVEGGWHGLAADPAYGGQGLPSSLGLVISEMVASSNTSWGMYPGLTHGAMSAIHAHGTDEQKNTYLRKLTAGQWTG
TMCLTEAHCGTDLGIIKTRAVPQADGSYAVTGSKIFISAGEHDMSDNIIHLVLAKLPDAPAGTKGISLFIVPKFLPDASG
EAGERNGVSCGSIEHKMGIKASATCVLNFDDAKGFLIGEPNKGLNCMFTMMNHARLGTGMQGLCLGEASFQGAIKYANDR
LQMRALTGAKSPDKPADPIIVHPDVRRMLLTMKAFNEGNRALTYFTAQMLDVAHLSPDAEARQEAEDLLAFLTPICKAFM
TDTGLEVTNHGMQVFGGHGFIREWGMEQLVRDCRIAPIYEGTNGIQALDLLGRKVLGSQGKLLRNFTKIVHKFCAANAGN
AQLGGFVAQLDGLNQQWGELTMKVGMAAMKNPDEVGAASVDYLMYSGYIVLGYLWLRMALVAQAQLESGEGDGDFCQGKL
ATCEFYFKRLLPRTAAHRSAIEAGSDCLMKLPAQLFAL
>Mature_597_residues
PEYKAPLRDMRFLIDHVFDFHTQYAALGAHDASPDMINAILDEGAKFCENVLAPLNRSGDEEGCHFDNGVVTTPTGFKQA
FAQYVEGGWHGLAADPAYGGQGLPSSLGLVISEMVASSNTSWGMYPGLTHGAMSAIHAHGTDEQKNTYLRKLTAGQWTGT
MCLTEAHCGTDLGIIKTRAVPQADGSYAVTGSKIFISAGEHDMSDNIIHLVLAKLPDAPAGTKGISLFIVPKFLPDASGE
AGERNGVSCGSIEHKMGIKASATCVLNFDDAKGFLIGEPNKGLNCMFTMMNHARLGTGMQGLCLGEASFQGAIKYANDRL
QMRALTGAKSPDKPADPIIVHPDVRRMLLTMKAFNEGNRALTYFTAQMLDVAHLSPDAEARQEAEDLLAFLTPICKAFMT
DTGLEVTNHGMQVFGGHGFIREWGMEQLVRDCRIAPIYEGTNGIQALDLLGRKVLGSQGKLLRNFTKIVHKFCAANAGNA
QLGGFVAQLDGLNQQWGELTMKVGMAAMKNPDEVGAASVDYLMYSGYIVLGYLWLRMALVAQAQLESGEGDGDFCQGKLA
TCEFYFKRLLPRTAAHRSAIEAGSDCLMKLPAQLFAL

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=404, Percent_Identity=28.4653465346535, Blast_Score=138, Evalue=2e-32,
Organism=Homo sapiens, GI76496475, Length=432, Percent_Identity=29.3981481481481, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI4557235, Length=432, Percent_Identity=29.3981481481481, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI21361497, Length=368, Percent_Identity=26.3586956521739, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI4557233, Length=319, Percent_Identity=26.9592476489028, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI4501857, Length=354, Percent_Identity=28.5310734463277, Blast_Score=103, Evalue=6e-22,
Organism=Homo sapiens, GI226958412, Length=438, Percent_Identity=25.5707762557078, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI7656849, Length=372, Percent_Identity=27.6881720430108, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI226958414, Length=367, Percent_Identity=25.6130790190736, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI4557231, Length=357, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI187960098, Length=357, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI87082384, Length=301, Percent_Identity=30.2325581395349, Blast_Score=118, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17508101, Length=414, Percent_Identity=27.0531400966184, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17569725, Length=426, Percent_Identity=28.6384976525822, Blast_Score=121, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17534899, Length=442, Percent_Identity=28.9592760180996, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71985184, Length=374, Percent_Identity=28.6096256684492, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=411, Percent_Identity=26.2773722627737, Blast_Score=109, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI86563383, Length=327, Percent_Identity=27.5229357798165, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI86563381, Length=327, Percent_Identity=27.5229357798165, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17533517, Length=379, Percent_Identity=27.1767810026385, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17538396, Length=414, Percent_Identity=24.8792270531401, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17570075, Length=368, Percent_Identity=25, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71990804, Length=287, Percent_Identity=29.616724738676, Blast_Score=90, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71985192, Length=256, Percent_Identity=30.859375, Blast_Score=86, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17551932, Length=352, Percent_Identity=25.5681818181818, Blast_Score=83, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32563615, Length=237, Percent_Identity=28.2700421940928, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17505929, Length=363, Percent_Identity=25.8953168044077, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281363737, Length=387, Percent_Identity=27.906976744186, Blast_Score=119, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24666513, Length=408, Percent_Identity=27.4509803921569, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI21356377, Length=373, Percent_Identity=26.0053619302949, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24646207, Length=380, Percent_Identity=25.2631578947368, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21355753, Length=379, Percent_Identity=26.3852242744063, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24660351, Length=315, Percent_Identity=27.9365079365079, Blast_Score=97, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 64437; Mature: 64305

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEYKAPLRDMRFLIDHVFDFHTQYAALGAHDASPDMINAILDEGAKFCENVLAPLNRSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DEEGCHFDNGVVTTPTGFKQAFAQYVEGGWHGLAADPAYGGQGLPSSLGLVISEMVASSN
CCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
TSWGMYPGLTHGAMSAIHAHGTDEQKNTYLRKLTAGQWTGTMCLTEAHCGTDLGIIKTRA
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEECC
VPQADGSYAVTGSKIFISAGEHDMSDNIIHLVLAKLPDAPAGTKGISLFIVPKFLPDASG
CCCCCCCEEEECCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC
EAGERNGVSCGSIEHKMGIKASATCVLNFDDAKGFLIGEPNKGLNCMFTMMNHARLGTGM
CCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
QGLCLGEASFQGAIKYANDRLQMRALTGAKSPDKPADPIIVHPDVRRMLLTMKAFNEGNR
CCEEECCHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCE
ALTYFTAQMLDVAHLSPDAEARQEAEDLLAFLTPICKAFMTDTGLEVTNHGMQVFGGHGF
EEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCH
IREWGMEQLVRDCRIAPIYEGTNGIQALDLLGRKVLGSQGKLLRNFTKIVHKFCAANAGN
HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
AQLGGFVAQLDGLNQQWGELTMKVGMAAMKNPDEVGAASVDYLMYSGYIVLGYLWLRMAL
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAQAQLESGEGDGDFCQGKLATCEFYFKRLLPRTAAHRSAIEAGSDCLMKLPAQLFAL
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
PEYKAPLRDMRFLIDHVFDFHTQYAALGAHDASPDMINAILDEGAKFCENVLAPLNRSG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DEEGCHFDNGVVTTPTGFKQAFAQYVEGGWHGLAADPAYGGQGLPSSLGLVISEMVASSN
CCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
TSWGMYPGLTHGAMSAIHAHGTDEQKNTYLRKLTAGQWTGTMCLTEAHCGTDLGIIKTRA
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEECC
VPQADGSYAVTGSKIFISAGEHDMSDNIIHLVLAKLPDAPAGTKGISLFIVPKFLPDASG
CCCCCCCEEEECCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC
EAGERNGVSCGSIEHKMGIKASATCVLNFDDAKGFLIGEPNKGLNCMFTMMNHARLGTGM
CCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
QGLCLGEASFQGAIKYANDRLQMRALTGAKSPDKPADPIIVHPDVRRMLLTMKAFNEGNR
CCEEECCHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCE
ALTYFTAQMLDVAHLSPDAEARQEAEDLLAFLTPICKAFMTDTGLEVTNHGMQVFGGHGF
EEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCH
IREWGMEQLVRDCRIAPIYEGTNGIQALDLLGRKVLGSQGKLLRNFTKIVHKFCAANAGN
HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
AQLGGFVAQLDGLNQQWGELTMKVGMAAMKNPDEVGAASVDYLMYSGYIVLGYLWLRMAL
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAQAQLESGEGDGDFCQGKLATCEFYFKRLLPRTAAHRSAIEAGSDCLMKLPAQLFAL
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]