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The map label for this gene is secY [H]

Identifier: 77461280

GI number: 77461280

Start: 5695085

End: 5696413

Strand: Reverse

Name: secY [H]

Synonym: Pfl01_5059

Alternate gene names: 77461280

Gene position: 5696413-5695085 (Counterclockwise)

Preceding gene: 77461281

Following gene: 77461279

Centisome position: 88.48

GC content: 55.0

Gene sequence:

>1329_bases
ATGGCTAAGCAAGGTGCTCTCTCTGCGCTCGGCAAAGGCGGTATGTCTGAACTTTGGGCTCGTCTGCGTTTTCTGTTCCT
GGCGATTATCGTCTACCGAATAGGCGCACACATCCCGGTTCCAGGTATCAACCCGGACCGACTCGCAGACCTGTTTCGAC
AGAATGAGGGGACCATTCTTAGCTTGTTCAACATGTTTTCCGGCGGCGCGCTGGAACGGATGAGCATCTTTGCGTTGGGG
ATCATGCCGTACATTTCGGCTTCGATCATCATGCAGTTGATGACCGCCGTCAGCCCGCAGCTGGAGCAGTTGAAGAAGGA
AGGTGAAGCTGGCCGTCGCAAGATCAGCCAGTACACCCGCTACGGCACCGTCGTCCTGGCTCTCGTTCAGGCCATTGGCA
TGTCCATTGGTCTGGCGGGGCAGGGCGTTGCGTTCACTGGTGACTTTGGCTTCCATTTCGTCGCGGTCTCCACGTTTGTG
GCTGGCGCGATGTTCATGATGTGGCTGGGTGAGCAGATTACTGAGCGTGGTGTAGGCAACGGTATCTCGATGTTGATTTT
TTCGGGTATCGTCGCCGGTCTTCCGAGAGCAATCGGGCAGTCTTTCGAGTCTGCGCGTCAGGGCGATATCAACATCTTCG
CTTTGGTTGCCATCGGTTTGCTGGCAGTAGCGATTATCGGTTTCGTGGTGTTCATTGAGCGTGGTCAGCGTCGTATCGCT
GTTCACTACGCCAAGCGTCAGCAGGGCCGCAAGGTTTTTGCTGCGCAGACAAGCCACTTGCCGCTGAAGGTGAACATGGC
CGGCGTTATTCCGGCTATTTTCGCGAGCAGCATTTTGCTGTTCCCGGCTTCGCTGGGTGCCTGGTTCGGTCAGTCTGAAG
GTATGGGCTGGTTGCAGGACATCTCGCAGTCGATCGCTCCTGGTCAGCCGTTGAATATTCTGCTGTTTAGTGCAGGGATT
ATTTTCTTCTGCTTCTTCTATACGGCGTTGATGTTCAATCCGAAAGACGTAGCGGAAAACCTGAAGAAGTCCGGTGCCTT
TATTCCGGGCATCCGTCCAGGTGAGCAGTCCGCGCGCTATATTGATGGCGTTTTGACTCGCTTGACCATGTTCGGTGCTC
TTTACATGACGGCCGTGTGCTTGTTGCCCCAGTTCCTGGTGGTTGCAGCAAACGTTCCGTTCTACCTTGGCGGGACCTCG
TTGCTGATCGTGGTCGTGGTTGTGATGGACTTCATGTCCCAAGTACAATCGCACCTCGTTTCGCACCAGTACGAATCCCT
GATGAAGAAAGCCAACCTGAAGGGTTACGGCAGCGGCATGTTGCGCTGA

Upstream 100 bases:

>100_bases
CGGTGAAGTGGCTCGCGCTGTCACTATCGGCAAGGGAATCGGCGCCACCAAAGGTGCGCGTGCGGCTATCGAAGCAGCTG
GCGGCAAGTTCGAGGAATAA

Downstream 100 bases:

>100_bases
GTACCCATAAGGTTCGAGGAGTTGGTGATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATTATTCG
CCGCGAAGGTGTTGTTCGAG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MAKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLADLFRQNEGTILSLFNMFSGGALERMSIFALG
IMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIGMSIGLAGQGVAFTGDFGFHFVAVSTFV
AGAMFMMWLGEQITERGVGNGISMLIFSGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGAWFGQSEGMGWLQDISQSIAPGQPLNILLFSAGI
IFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYIDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTS
LLIVVVVVMDFMSQVQSHLVSHQYESLMKKANLKGYGSGMLR

Sequences:

>Translated_442_residues
MAKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLADLFRQNEGTILSLFNMFSGGALERMSIFALG
IMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIGMSIGLAGQGVAFTGDFGFHFVAVSTFV
AGAMFMMWLGEQITERGVGNGISMLIFSGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGAWFGQSEGMGWLQDISQSIAPGQPLNILLFSAGI
IFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYIDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTS
LLIVVVVVMDFMSQVQSHLVSHQYESLMKKANLKGYGSGMLR
>Mature_441_residues
AKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLADLFRQNEGTILSLFNMFSGGALERMSIFALGI
MPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIGMSIGLAGQGVAFTGDFGFHFVAVSTFVA
GAMFMMWLGEQITERGVGNGISMLIFSGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIAV
HYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGAWFGQSEGMGWLQDISQSIAPGQPLNILLFSAGII
FFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYIDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTSL
LIVVVVVMDFMSQVQSHLVSHQYESLMKKANLKGYGSGMLR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=442, Percent_Identity=64.4796380090498, Blast_Score=547, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47821; Mature: 47690

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLADLFRQNEGTIL
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHH
SLFNMFSGGALERMSIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
YGTVVLALVQAIGMSIGLAGQGVAFTGDFGFHFVAVSTFVAGAMFMMWLGEQITERGVGN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GISMLIFSGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGAWFGQSEGMGWLQD
HHHHHHHCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ISQSIAPGQPLNILLFSAGIIFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARY
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
IDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTSLLIVVVVVMDFMSQVQSHLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
SHQYESLMKKANLKGYGSGMLR
HHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLADLFRQNEGTIL
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHH
SLFNMFSGGALERMSIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
YGTVVLALVQAIGMSIGLAGQGVAFTGDFGFHFVAVSTFVAGAMFMMWLGEQITERGVGN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GISMLIFSGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGAWFGQSEGMGWLQD
HHHHHHHCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ISQSIAPGQPLNILLFSAGIIFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARY
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
IDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTSLLIVVVVVMDFMSQVQSHLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
SHQYESLMKKANLKGYGSGMLR
HHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]