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The map label for this gene is ybbN [H]

Identifier: 77461244

GI number: 77461244

Start: 5656837

End: 5657709

Strand: Direct

Name: ybbN [H]

Synonym: Pfl01_5023

Alternate gene names: 77461244

Gene position: 5656837-5657709 (Clockwise)

Preceding gene: 77461243

Following gene: 77461246

Centisome position: 87.86

GC content: 62.2

Gene sequence:

>873_bases
ATGAGTCAGCAAACGCCGTACATCTTCGACGCCACGACGGCCGACTTCGACCAGTCGGTGATCGAGGCTTCCTTTCAAAA
ACCGGTGCTGGTGGATTTCTGGGCCGAATGGTGTGCGCCGTGCAAGGCGCTGATGCCGATGCTGCAAGGCATCGCCGAAA
GCTATCAGGGTGAGTTGCTGCTGGCCAAGGTCAATTGCGATATCGAGCAGGACATCGTCGCCCGCTTCGGCATCCGTAGC
CTGCCGACCGTGGTGCTGTTCAAGGACGGTCAACCGGTGGATGGCTTTGCCGGTGCACAACCGGAGTCCGCCGTACGCGC
CCTGCTCGAACCCCATGTGCAGATGCCGGCGCCGTCCGCCGCCGATCCGTTCGAACAGGCTCAGGCACTGTTCGACGAGG
GCCGTTACGCCGACGCGGAAGCAAAGCTGGTCGTGCTGTTGGGCGAGGACAATACCAACGCCAAGGCGCTGATTCTTTAC
GCTCGTTGCCTGACCGAACGCGGTGAGCTGGGCGAAGCGCAAACCGTGCTCGACGCGGTCAAGAGCGACGAACACAAGGC
TGCACTCGCCGGTGCCAAGGCGCAGATCAAGTTCCTCGGCCTGGCCCGTGACCTGCCGGACGCCGCCGACCTGAAGAGCC
GTCTGGCGCAAAACCCGCAGGACGATGAAGCGGTGTATCAACTGGCGATCCAGCAACTGGCCCGTCAGCAATACGAAGCG
GCGCTGGACGCATTGCTCAAGCTGTTCATCCGCAACCGCAGCTACGGCGAAGGCCTGCCGCACAAGACCTTGCTGCAAGT
GTTCGAACTGCTGGGCAACGATCACCCGCTGGTGACCGCTTACCGGCGCAAGGTGTTTGCGGCGCTGTACTAA

Upstream 100 bases:

>100_bases
GGATCTGGCCGAGCCCGAAGAGTTTCGCCATGTCAGCCTCTACCATGCGGCCCGCGCCTGACCGTATAGTTGCCCCATTC
ACGCTTTTACGAGAGACCCC

Downstream 100 bases:

>100_bases
TTGCTTACTCGATCCAGCTGTAGAGCGGCGTATCCCCGCCGCTCAGCACTTTCACATCGGATGAATGGCGCAGGCGCACC
AGCAATCGCTTGCCCGCCGC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSQQTPYIFDATTADFDQSVIEASFQKPVLVDFWAEWCAPCKALMPMLQGIAESYQGELLLAKVNCDIEQDIVARFGIRS
LPTVVLFKDGQPVDGFAGAQPESAVRALLEPHVQMPAPSAADPFEQAQALFDEGRYADAEAKLVVLLGEDNTNAKALILY
ARCLTERGELGEAQTVLDAVKSDEHKAALAGAKAQIKFLGLARDLPDAADLKSRLAQNPQDDEAVYQLAIQQLARQQYEA
ALDALLKLFIRNRSYGEGLPHKTLLQVFELLGNDHPLVTAYRRKVFAALY

Sequences:

>Translated_290_residues
MSQQTPYIFDATTADFDQSVIEASFQKPVLVDFWAEWCAPCKALMPMLQGIAESYQGELLLAKVNCDIEQDIVARFGIRS
LPTVVLFKDGQPVDGFAGAQPESAVRALLEPHVQMPAPSAADPFEQAQALFDEGRYADAEAKLVVLLGEDNTNAKALILY
ARCLTERGELGEAQTVLDAVKSDEHKAALAGAKAQIKFLGLARDLPDAADLKSRLAQNPQDDEAVYQLAIQQLARQQYEA
ALDALLKLFIRNRSYGEGLPHKTLLQVFELLGNDHPLVTAYRRKVFAALY
>Mature_289_residues
SQQTPYIFDATTADFDQSVIEASFQKPVLVDFWAEWCAPCKALMPMLQGIAESYQGELLLAKVNCDIEQDIVARFGIRSL
PTVVLFKDGQPVDGFAGAQPESAVRALLEPHVQMPAPSAADPFEQAQALFDEGRYADAEAKLVVLLGEDNTNAKALILYA
RCLTERGELGEAQTVLDAVKSDEHKAALAGAKAQIKFLGLARDLPDAADLKSRLAQNPQDDEAVYQLAIQQLARQQYEAA
LDALLKLFIRNRSYGEGLPHKTLLQVFELLGNDHPLVTAYRRKVFAALY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=96, Percent_Identity=36.4583333333333, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI50592994, Length=85, Percent_Identity=37.6470588235294, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081747, Length=273, Percent_Identity=36.6300366300366, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788936, Length=104, Percent_Identity=38.4615384615385, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87082331, Length=106, Percent_Identity=39.622641509434, Blast_Score=89, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI212646193, Length=92, Percent_Identity=44.5652173913043, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17507705, Length=99, Percent_Identity=34.3434343434343, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71980565, Length=110, Percent_Identity=29.0909090909091, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71980562, Length=100, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71998175, Length=112, Percent_Identity=33.0357142857143, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6323072, Length=98, Percent_Identity=33.6734693877551, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6321648, Length=97, Percent_Identity=32.9896907216495, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573567, Length=112, Percent_Identity=36.6071428571429, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639826, Length=108, Percent_Identity=36.1111111111111, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24639068, Length=96, Percent_Identity=35.4166666666667, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24664269, Length=106, Percent_Identity=31.1320754716981, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17530795, Length=88, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17648013, Length=87, Percent_Identity=39.0804597701149, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24583090, Length=87, Percent_Identity=39.0804597701149, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21358065, Length=108, Percent_Identity=35.1851851851852, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31894; Mature: 31762

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQTPYIFDATTADFDQSVIEASFQKPVLVDFWAEWCAPCKALMPMLQGIAESYQGELL
CCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LAKVNCDIEQDIVARFGIRSLPTVVLFKDGQPVDGFAGAQPESAVRALLEPHVQMPAPSA
EEEECCCHHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
ADPFEQAQALFDEGRYADAEAKLVVLLGEDNTNAKALILYARCLTERGELGEAQTVLDAV
CCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
KSDEHKAALAGAKAQIKFLGLARDLPDAADLKSRLAQNPQDDEAVYQLAIQQLARQQYEA
HCCCHHHHHHCCHHHEEEEEHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ALDALLKLFIRNRSYGEGLPHKTLLQVFELLGNDHPLVTAYRRKVFAALY
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQQTPYIFDATTADFDQSVIEASFQKPVLVDFWAEWCAPCKALMPMLQGIAESYQGELL
CCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LAKVNCDIEQDIVARFGIRSLPTVVLFKDGQPVDGFAGAQPESAVRALLEPHVQMPAPSA
EEEECCCHHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
ADPFEQAQALFDEGRYADAEAKLVVLLGEDNTNAKALILYARCLTERGELGEAQTVLDAV
CCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
KSDEHKAALAGAKAQIKFLGLARDLPDAADLKSRLAQNPQDDEAVYQLAIQQLARQQYEA
HCCCHHHHHHCCHHHEEEEEHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ALDALLKLFIRNRSYGEGLPHKTLLQVFELLGNDHPLVTAYRRKVFAALY
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]