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The map label for this gene is yvbU [H]

Identifier: 77461155

GI number: 77461155

Start: 5559580

End: 5560494

Strand: Direct

Name: yvbU [H]

Synonym: Pfl01_4934

Alternate gene names: 77461155

Gene position: 5559580-5560494 (Clockwise)

Preceding gene: 77461149

Following gene: 77461157

Centisome position: 86.35

GC content: 61.75

Gene sequence:

>915_bases
GTGGCCGCTTACAACCTGCGTCAGTTGAAATACTTCATCACCACCGTCGAATGCGGCAGCGTCGCCGAAGCGTCGCGCAA
GCTGTACATCGCGCAACCGGCGATTTCCACGGCGATCAAGGGGCTGGAAGACAGCTTCGGCGTGCAACTGCTGATCCGTC
ATCACGCTCAGGGCGTGTCGCTGACACCGAGCGGCGCGCGGTTCTTCCGCAAGGCTCAGGAACTGCTGCGCATGGCCAAG
GAGTTCGAACAGAACGCCCTCGCCGACAACGACGTGGTGGCCGGGCAGATCGATATCGGCTGTTTCGAAACCGTCGCGCC
GCTGTACCTGCCGCAGTTGATTGCGGGCTTCTCGGCGCTGTATCCGGGGGTGAAGATCCGCATCCGCGACGGCGAACAAC
AGGAACTGGTGCAAGGCCTGACCTCGGGCACCTTCGACTTGGCAATCCTCTACAAACACGACCTCGATGCCACCATCGAA
ACCGAACCGCTGATGCCGGCCCAACGGCCTTATGCCCTGCTCCCGGCAGATCACCGCTTCGCCCAGCTCAAGCAGGTTTC
GCTGCGGGACTTGTGCCTGGAACCGATGATCCTGCTCGACGTGCAACCGAGCCGCACCTACTTCGTCAGCCTGTTCGAAG
AACTCGGCCTGTCGCCGCGCATCGAGTTCAGCTCGCCGTCGATCGAAATGGTGCGCGGCATGGTCGGCCAAGGTTTCGGC
TTCTCGATCCTGGTCACCCGCCCGCATTCGGAATGCACCTACGACGGCAAGAAAGTCGTGTGCGTCGACATCGTCGAAGA
TGTCACCGGGTCAGGTCTGGTGGCGGCGTGGCTCAAACGTGGACAACTGACCAAACCGGCGCAGTTGTTTGCCGATTATT
GTCGGGAGCAGCTGACCGCGAAGGCCAGCCGCTGA

Upstream 100 bases:

>100_bases
TATGGGGCTATTGTTCAGGGACAAAAAAACCGCCGACAGAACGGAGGCCGGCGGCTTACAAATTGCTTGGATGTGAAATC
CGTTCGCTTTGAGGTTCACC

Downstream 100 bases:

>100_bases
CTCTCACGTACCGCGCGGTTTGGCTCGTGCGGTGGCTTCAGCCACCAGCGGATCATCCGGCCAGTAATGCTTCGGATAGC
GCCCCTTCAGATCCTTCTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAAYNLRQLKYFITTVECGSVAEASRKLYIAQPAISTAIKGLEDSFGVQLLIRHHAQGVSLTPSGARFFRKAQELLRMAK
EFEQNALADNDVVAGQIDIGCFETVAPLYLPQLIAGFSALYPGVKIRIRDGEQQELVQGLTSGTFDLAILYKHDLDATIE
TEPLMPAQRPYALLPADHRFAQLKQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLSPRIEFSSPSIEMVRGMVGQGFG
FSILVTRPHSECTYDGKKVVCVDIVEDVTGSGLVAAWLKRGQLTKPAQLFADYCREQLTAKASR

Sequences:

>Translated_304_residues
MAAYNLRQLKYFITTVECGSVAEASRKLYIAQPAISTAIKGLEDSFGVQLLIRHHAQGVSLTPSGARFFRKAQELLRMAK
EFEQNALADNDVVAGQIDIGCFETVAPLYLPQLIAGFSALYPGVKIRIRDGEQQELVQGLTSGTFDLAILYKHDLDATIE
TEPLMPAQRPYALLPADHRFAQLKQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLSPRIEFSSPSIEMVRGMVGQGFG
FSILVTRPHSECTYDGKKVVCVDIVEDVTGSGLVAAWLKRGQLTKPAQLFADYCREQLTAKASR
>Mature_303_residues
AAYNLRQLKYFITTVECGSVAEASRKLYIAQPAISTAIKGLEDSFGVQLLIRHHAQGVSLTPSGARFFRKAQELLRMAKE
FEQNALADNDVVAGQIDIGCFETVAPLYLPQLIAGFSALYPGVKIRIRDGEQQELVQGLTSGTFDLAILYKHDLDATIET
EPLMPAQRPYALLPADHRFAQLKQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLSPRIEFSSPSIEMVRGMVGQGFGF
SILVTRPHSECTYDGKKVVCVDIVEDVTGSGLVAAWLKRGQLTKPAQLFADYCREQLTAKASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=28.135593220339, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790399, Length=246, Percent_Identity=28.4552845528455, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=26.1224489795918, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787601, Length=166, Percent_Identity=30.1204819277108, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI145693105, Length=198, Percent_Identity=28.7878787878788, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788297, Length=166, Percent_Identity=32.5301204819277, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=259, Percent_Identity=26.2548262548263, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788887, Length=310, Percent_Identity=24.8387096774194, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789204, Length=245, Percent_Identity=27.7551020408163, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=146, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788296, Length=290, Percent_Identity=23.7931034482759, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=300, Percent_Identity=21.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=162, Percent_Identity=30.8641975308642, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=245, Percent_Identity=27.7551020408163, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=301, Percent_Identity=24.5847176079734, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=29.3650793650794, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33649; Mature: 33518

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAYNLRQLKYFITTVECGSVAEASRKLYIAQPAISTAIKGLEDSFGVQLLIRHHAQGVS
CCCCHHHHHEEEEEEECCCCHHHHCCEEEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCC
LTPSGARFFRKAQELLRMAKEFEQNALADNDVVAGQIDIGCFETVAPLYLPQLIAGFSAL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
YPGVKIRIRDGEQQELVQGLTSGTFDLAILYKHDLDATIETEPLMPAQRPYALLPADHRF
CCCCEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCEECCCCCCCCCCCEEECCCCHHH
AQLKQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLSPRIEFSSPSIEMVRGMVGQGFG
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCC
FSILVTRPHSECTYDGKKVVCVDIVEDVTGSGLVAAWLKRGQLTKPAQLFADYCREQLTA
EEEEEECCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KASR
CCCC
>Mature Secondary Structure 
AAYNLRQLKYFITTVECGSVAEASRKLYIAQPAISTAIKGLEDSFGVQLLIRHHAQGVS
CCCHHHHHEEEEEEECCCCHHHHCCEEEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCC
LTPSGARFFRKAQELLRMAKEFEQNALADNDVVAGQIDIGCFETVAPLYLPQLIAGFSAL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
YPGVKIRIRDGEQQELVQGLTSGTFDLAILYKHDLDATIETEPLMPAQRPYALLPADHRF
CCCCEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCEECCCCCCCCCCCEEECCCCHHH
AQLKQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLSPRIEFSSPSIEMVRGMVGQGFG
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCC
FSILVTRPHSECTYDGKKVVCVDIVEDVTGSGLVAAWLKRGQLTKPAQLFADYCREQLTA
EEEEEECCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KASR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]