Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 77461106

GI number: 77461106

Start: 5508329

End: 5509696

Strand: Reverse

Name: radA [H]

Synonym: Pfl01_4885

Alternate gene names: 77461106

Gene position: 5509696-5508329 (Counterclockwise)

Preceding gene: 77461107

Following gene: 77461104

Centisome position: 85.58

GC content: 62.79

Gene sequence:

>1368_bases
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAACACTCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGCACCGGCTGGGCCG
GGCAACAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATTGAAGAGATTCCGCGTTTTTCCACAGCCTCCGGTGAACTC
GACCGAGTCCTTGGCGGCGGTCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGTATCGGCAAATCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAGGTCG
CCATGCGCGCACGCCGCCTGGGCCTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAATTGCAATCGGCGCC
GGGCGGCGTATCCCAGGTACGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTTGCAGGGCCGCGGGTTCTGGAACACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGGTTGCGTTTGCTGCGAGCGGTAAAAAACCGTTTCGGTGCCGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTTACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGACCGATGCTGGTGGAAGTCCAGGCACTGGTGGATGACAGCCATCTGGCC
AATCCGCGTCGGGTGACGCTGGGTCTGGACCAGAATCGTCTGGCGATGCTGTTGGCTGTTCTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCGTCTGACCTGGCGTTGA
TGGCCGCCGTCATGTCGAGCCTGCGCAACCGTCCGCTCCCCCATGATTTGCTGGTGTTTGGTGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAGCGATTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCGCCTCCGGGTTTGCAGATCATTGCGGTGACGCGTCTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTGA

Upstream 100 bases:

>100_bases
CAGTAGCGCCGCGCGTCTGGCCAGCGGAGAAATCCGGTCCGGTGCGCCGCGCTGATCGACGATGGCTGCGTTATCATCTC
GGTTTTTGCCGGGGGTTCAG

Downstream 100 bases:

>100_bases
TCAGACGTCAATCAGCGCCCCAAGCTCGCGTTCCAGTTCGGTTTCGTCGGTCAGATTGAGTTCGATCAGGCGACGCAGGC
GCTGAATCGACTCCAGGCTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Sequences:

>Translated_455_residues
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE
>Mature_454_residues
AKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGELD
RVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIAT
ARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEG
ESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLAN
PRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGE
VRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=63.3986928104575, Blast_Score=602, Evalue=1e-173,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48716; Mature: 48585

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIK
CCCCHHHCCCHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
TLAEVSIEEIPRFSTASGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMP
HHHHHHHHHCCCCCCCCCCHHHHHCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
ALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIATARQEKPKVMVIDSIQTIFT
EEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
EQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEEEC
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATW
CCCCCHHHHHHHHHHHHCCHHHCCEECCCCHHHHHCCCCCEEEEEECHHHCCCCEEEEEE
EGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVG
CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHEEHHC
GVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAAKHGF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
KRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE
CEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
AKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIK
CCCHHHCCCHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
TLAEVSIEEIPRFSTASGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMP
HHHHHHHHHCCCCCCCCCCHHHHHCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
ALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIATARQEKPKVMVIDSIQTIFT
EEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
EQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEEEC
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATW
CCCCCHHHHHHHHHHHHCCHHHCCEECCCCHHHHHCCCCCEEEEEECHHHCCCCEEEEEE
EGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVG
CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHEEHHC
GVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAAKHGF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
KRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE
CEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]