| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yebT [H]
Identifier: 77461001
GI number: 77461001
Start: 5389366
End: 5391669
Strand: Reverse
Name: yebT [H]
Synonym: Pfl01_4780
Alternate gene names: 77461001
Gene position: 5391669-5389366 (Counterclockwise)
Preceding gene: 77461002
Following gene: 77460997
Centisome position: 83.74
GC content: 60.29
Gene sequence:
>2304_bases ATGACTGATTTGCCTGTAGCGAAAACCCGACCGGCTTCGAACTGGTCTGCCATCTGGGTGCTGCCCCTGATCGCTCTGAT TATCGGCGGCTGGCTCGGCTGGCGTGCCTATAACGAAACCGGCATCGAGATTCAGGTGCGGTTTGAAAGCGGTGAAGGCA TTCAGGCCAACAAGACCGAGGTGGTCTACAAAGGCATGCCGGTCGGCAAGGTGAAAGCCCTCAAGCTCGATGATGAAGGC AACTCCAAAGGTGTCATCGCGACCATCGAGATGAACAAGGATGTCGATCAGTACCTGAAGACCAGCACCCGTTTCTGGCT GGTCAAGCCAAGCGTGACCCTGGCCGGGATCACCGGCCTGGAGACCCTGGTATCGGGTAACTACGTCGCCATCAGCCCCG GCGAAGGCGAGCCGACCCGCAAGTTCAAGGCCCTGGCCGAAGAGCCACCGCTATCGGACTCCAAGCCCGGCCTGCACCTG ACGATCAAGGCCGATCGCCTCGGTTCGTTGAATCGCGGCAGCCCAGTGTTCTACAAGCAGATCAAAGTGGGTCAGATCAA AAGTTACGTGCTGTCGGAAGACCAGAGCACCGTCGAACTCAAGGTGTTCATCGAACCGACCTACGCCAAACTGGTGCGCA AACACACCCGTTTCTGGAACGCCAGCGGCATCAGCATCGACGCCAACCTGTCCGGGGTGAAAGTGCGCAGCGAATCCCTG GCCAGCATCGTCGCCGGCGGTATTGCCTTTGCTACCCCGGAGAACCGCAAGGACAGCCCGCCTACCGATCCAAGCCTGCC GTTCCGTCTCTACGAAGACTTCGATGCGGCCGCCGCCGGTATCCGTGTAAAGGTCAAACTCAGCGATTTCGAGGGCCTCC AAGCCGGGCGCACTCCAGTGATGTACAAGGGCATTCAGGTCGGTAACCTGAAAGCGCTGAAAATCGATCCTGACCTGTCC AGCGCCACCGCCGAACTGACTCTCGACCCGCTGGCTGAAGACTATCTGGTCACCGGCACGCAATTCTGGGTGGTCAAACC ATCGATCTCCCTGGCCGGCATCACCGGTCTGGAAGCGTTGGTAAAAGGTAACTACATCGCCGTACGCCCGGGTGACAAGG GTGGTGCGCCACAGCGTGAATTCGAAGCCCGGCCCAAAGCGCCGCCGCTGGATCTGCGCGCACCCGGCCTGCACCTGGTG TTGTTCACCGATACCCTCGGCTCGATCGATGTCGGCAGCCCGATCCTCTACAAGCAGGTCAAGGTCGGTTCGGTGCAGAG TTATCAGTTCTCCAAGACCCGCAAGCAACTGGTGATCGGCGTCCACATCGAGAAGGAATACGAAAACCTGGTCAACGCCT CGACCCGGTTCTGGAACGTCAGCGGCGTCACGCTGACCGGCGGTTTGACCGGTGGGATTCAGGTCAAGAGTGAATCGCTG CAGACCCTGATGGCCGGCGGCATCGCCTTCGAAACCCCGCAAGCCAAGGCACCGCTGCAAAAACGCATTCCGCGCTTCCG TCTGTTCGCCAGCCATGATGAAGCGAATCAGAAAGGCGCCGTCGTCACCATCAAGGTCGATCGCGCGGACGGACTGCGCA GCGGCACCCCGGTTCGCTTCAAAGGCCTGGACGTTGGCAAGATCGAAAGCGTCGACCTGACCGATGATCTGCAATCGGTG ATCCTCACCGCGCGCATCACCGAAGTGCCGGAGAAGATCGCACGGGTCGGCAGCCAGTTCTGGGTGGTCAAACCGGAATT GGGTCTGATCAAGACCTCGAACCTGGAGACCCTGGTCACCGGCCAGTACATCGAAGTGCAACCGGCGGCCAAGAACCTCG GCCCGCAGAAGAACTTCGTGGCCCTGGCCAATCCGCCGGAAGTCACCAAGCAAGAGGCTGGCTTGAGTCTGGTATTGAGC GCTGCCCGTCGCGGCTCGCTGAAACCGGGTGTTCCGGTGACTTACCGAGAGATCACCGTGGGCAAAGTCACAGGTTACGA ACTGGGCCAGACCGCGGATCGCGTACTGGTGCACATCCTGATCGAGCCGAAATACGCCCCGTTGGTGCGCAGCGGCAGTC GCTTCTGGAACACCAGTGGCGTCGGTTTCGACATCGGCCTGTTCAAAGGCGTAACGGTGCGCACGGAGTCGCTTGAGACA GCGATTCAGGGTGGCATTGCCTTCGCCACGCCGGACGGCGAGCAGATGGGCAACCCCGCGCGCGCCGAGCAAACCTTCCC GCTGTTCGACAAGTTCGAAGACGAGTGGCTGACCTGGGCACCGAAAATTCCCCTCGGCAAATAA
Upstream 100 bases:
>100_bases GGCGCCATCGCCTTCGCCAGTGTGGTGATTCTGACGATGCTCGCCGCTGTCACTTTCGATCCCCGACTGATTTGGGATAA CACGGAGTCGGACGCCGACC
Downstream 100 bases:
>100_bases TCCAGAGCCCATGAAAAAGGGCCGCGATCCATTGGATCGCGGCCCTTTTTTGTGCCCGTCAGTTACGTATCAAACCGCAT CCAGCTCCGGCTCGTCAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 767; Mature: 766
Protein sequence:
>767_residues MTDLPVAKTRPASNWSAIWVLPLIALIIGGWLGWRAYNETGIEIQVRFESGEGIQANKTEVVYKGMPVGKVKALKLDDEG NSKGVIATIEMNKDVDQYLKTSTRFWLVKPSVTLAGITGLETLVSGNYVAISPGEGEPTRKFKALAEEPPLSDSKPGLHL TIKADRLGSLNRGSPVFYKQIKVGQIKSYVLSEDQSTVELKVFIEPTYAKLVRKHTRFWNASGISIDANLSGVKVRSESL ASIVAGGIAFATPENRKDSPPTDPSLPFRLYEDFDAAAAGIRVKVKLSDFEGLQAGRTPVMYKGIQVGNLKALKIDPDLS SATAELTLDPLAEDYLVTGTQFWVVKPSISLAGITGLEALVKGNYIAVRPGDKGGAPQREFEARPKAPPLDLRAPGLHLV LFTDTLGSIDVGSPILYKQVKVGSVQSYQFSKTRKQLVIGVHIEKEYENLVNASTRFWNVSGVTLTGGLTGGIQVKSESL QTLMAGGIAFETPQAKAPLQKRIPRFRLFASHDEANQKGAVVTIKVDRADGLRSGTPVRFKGLDVGKIESVDLTDDLQSV ILTARITEVPEKIARVGSQFWVVKPELGLIKTSNLETLVTGQYIEVQPAAKNLGPQKNFVALANPPEVTKQEAGLSLVLS AARRGSLKPGVPVTYREITVGKVTGYELGQTADRVLVHILIEPKYAPLVRSGSRFWNTSGVGFDIGLFKGVTVRTESLET AIQGGIAFATPDGEQMGNPARAEQTFPLFDKFEDEWLTWAPKIPLGK
Sequences:
>Translated_767_residues MTDLPVAKTRPASNWSAIWVLPLIALIIGGWLGWRAYNETGIEIQVRFESGEGIQANKTEVVYKGMPVGKVKALKLDDEG NSKGVIATIEMNKDVDQYLKTSTRFWLVKPSVTLAGITGLETLVSGNYVAISPGEGEPTRKFKALAEEPPLSDSKPGLHL TIKADRLGSLNRGSPVFYKQIKVGQIKSYVLSEDQSTVELKVFIEPTYAKLVRKHTRFWNASGISIDANLSGVKVRSESL ASIVAGGIAFATPENRKDSPPTDPSLPFRLYEDFDAAAAGIRVKVKLSDFEGLQAGRTPVMYKGIQVGNLKALKIDPDLS SATAELTLDPLAEDYLVTGTQFWVVKPSISLAGITGLEALVKGNYIAVRPGDKGGAPQREFEARPKAPPLDLRAPGLHLV LFTDTLGSIDVGSPILYKQVKVGSVQSYQFSKTRKQLVIGVHIEKEYENLVNASTRFWNVSGVTLTGGLTGGIQVKSESL QTLMAGGIAFETPQAKAPLQKRIPRFRLFASHDEANQKGAVVTIKVDRADGLRSGTPVRFKGLDVGKIESVDLTDDLQSV ILTARITEVPEKIARVGSQFWVVKPELGLIKTSNLETLVTGQYIEVQPAAKNLGPQKNFVALANPPEVTKQEAGLSLVLS AARRGSLKPGVPVTYREITVGKVTGYELGQTADRVLVHILIEPKYAPLVRSGSRFWNTSGVGFDIGLFKGVTVRTESLET AIQGGIAFATPDGEQMGNPARAEQTFPLFDKFEDEWLTWAPKIPLGK >Mature_766_residues TDLPVAKTRPASNWSAIWVLPLIALIIGGWLGWRAYNETGIEIQVRFESGEGIQANKTEVVYKGMPVGKVKALKLDDEGN SKGVIATIEMNKDVDQYLKTSTRFWLVKPSVTLAGITGLETLVSGNYVAISPGEGEPTRKFKALAEEPPLSDSKPGLHLT IKADRLGSLNRGSPVFYKQIKVGQIKSYVLSEDQSTVELKVFIEPTYAKLVRKHTRFWNASGISIDANLSGVKVRSESLA SIVAGGIAFATPENRKDSPPTDPSLPFRLYEDFDAAAAGIRVKVKLSDFEGLQAGRTPVMYKGIQVGNLKALKIDPDLSS ATAELTLDPLAEDYLVTGTQFWVVKPSISLAGITGLEALVKGNYIAVRPGDKGGAPQREFEARPKAPPLDLRAPGLHLVL FTDTLGSIDVGSPILYKQVKVGSVQSYQFSKTRKQLVIGVHIEKEYENLVNASTRFWNVSGVTLTGGLTGGIQVKSESLQ TLMAGGIAFETPQAKAPLQKRIPRFRLFASHDEANQKGAVVTIKVDRADGLRSGTPVRFKGLDVGKIESVDLTDDLQSVI LTARITEVPEKIARVGSQFWVVKPELGLIKTSNLETLVTGQYIEVQPAAKNLGPQKNFVALANPPEVTKQEAGLSLVLSA ARRGSLKPGVPVTYREITVGKVTGYELGQTADRVLVHILIEPKYAPLVRSGSRFWNTSGVGFDIGLFKGVTVRTESLETA IQGGIAFATPDGEQMGNPARAEQTFPLFDKFEDEWLTWAPKIPLGK
Specific function: Unknown
COG id: COG3008
COG function: function code R; Paraquat-inducible protein B
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pqiB family [H]
Homologues:
Organism=Escherichia coli, GI87081984, Length=705, Percent_Identity=30.2127659574468, Blast_Score=293, Evalue=3e-80, Organism=Escherichia coli, GI1787184, Length=313, Percent_Identity=30.6709265175719, Blast_Score=167, Evalue=3e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003399 [H]
Pfam domain/function: PF02470 MCE [H]
EC number: NA
Molecular weight: Translated: 83166; Mature: 83035
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLPVAKTRPASNWSAIWVLPLIALIIGGWLGWRAYNETGIEIQVRFESGEGIQANKTE CCCCCCCCCCCCCCCCEEHHHHHHHHHHCCHHHEEEECCCCCEEEEEECCCCCCCCCCCE VVYKGMPVGKVKALKLDDEGNSKGVIATIEMNKDVDQYLKTSTRFWLVKPSVTLAGITGL EEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHCCCEEEEEECCEEEEECCHH ETLVSGNYVAISPGEGEPTRKFKALAEEPPLSDSKPGLHLTIKADRLGSLNRGSPVFYKQ HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCCCCCCCCCEEEEE IKVGQIKSYVLSEDQSTVELKVFIEPTYAKLVRKHTRFWNASGISIDANLSGVKVRSESL EEHHHHHHHEECCCCCEEEEEEEECCHHHHHHHHHHHEECCCCEEEECCCCCEEECHHHH ASIVAGGIAFATPENRKDSPPTDPSLPFRLYEDFDAAAAGIRVKVKLSDFEGLQAGRTPV HHHHHCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCE MYKGIQVGNLKALKIDPDLSSATAELTLDPLAEDYLVTGTQFWVVKPSISLAGITGLEAL EEECEEECCEEEEEECCCCCCCEEEEEECCCCCCEEEECEEEEEECCCCEEECCHHHHHH VKGNYIAVRPGDKGGAPQREFEARPKAPPLDLRAPGLHLVLFTDTLGSIDVGSPILYKQV HCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEE KVGSVQSYQFSKTRKQLVIGVHIEKEYENLVNASTRFWNVSGVTLTGGLTGGIQVKSESL ECCCCCCEEHHCCCEEEEEEEEEEHHHHHHHCCCCEEEEECCEEEECCCCCCEEEEHHHH QTLMAGGIAFETPQAKAPLQKRIPRFRLFASHDEANQKGAVVTIKVDRADGLRSGTPVRF HHHHHCCEEEECCCCCCCHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEE KGLDVGKIESVDLTDDLQSVILTARITEVPEKIARVGSQFWVVKPELGLIKTSNLETLVT ECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCEEEE GQYIEVQPAAKNLGPQKNFVALANPPEVTKQEAGLSLVLSAARRGSLKPGVPVTYREITV CCEEEEECHHHCCCCCCCEEEECCCCHHHHHHCCHHEEEHHHHCCCCCCCCCEEEEEEEE GKVTGYELGQTADRVLVHILIEPKYAPLVRSGSRFWNTSGVGFDIGLFKGVTVRTESLET EEECCCCCCCCCCEEEEEEEECCCCCCHHHCCCCEECCCCCEEEEHHHCCEEEEHHHHHH AIQGGIAFATPDGEQMGNPARAEQTFPLFDKFEDEWLTWAPKIPLGK HHHCCEEEECCCHHHCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCC >Mature Secondary Structure TDLPVAKTRPASNWSAIWVLPLIALIIGGWLGWRAYNETGIEIQVRFESGEGIQANKTE CCCCCCCCCCCCCCCEEHHHHHHHHHHCCHHHEEEECCCCCEEEEEECCCCCCCCCCCE VVYKGMPVGKVKALKLDDEGNSKGVIATIEMNKDVDQYLKTSTRFWLVKPSVTLAGITGL EEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHCCCEEEEEECCEEEEECCHH ETLVSGNYVAISPGEGEPTRKFKALAEEPPLSDSKPGLHLTIKADRLGSLNRGSPVFYKQ HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCCCCCCCCCEEEEE IKVGQIKSYVLSEDQSTVELKVFIEPTYAKLVRKHTRFWNASGISIDANLSGVKVRSESL EEHHHHHHHEECCCCCEEEEEEEECCHHHHHHHHHHHEECCCCEEEECCCCCEEECHHHH ASIVAGGIAFATPENRKDSPPTDPSLPFRLYEDFDAAAAGIRVKVKLSDFEGLQAGRTPV HHHHHCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCE MYKGIQVGNLKALKIDPDLSSATAELTLDPLAEDYLVTGTQFWVVKPSISLAGITGLEAL EEECEEECCEEEEEECCCCCCCEEEEEECCCCCCEEEECEEEEEECCCCEEECCHHHHHH VKGNYIAVRPGDKGGAPQREFEARPKAPPLDLRAPGLHLVLFTDTLGSIDVGSPILYKQV HCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEE KVGSVQSYQFSKTRKQLVIGVHIEKEYENLVNASTRFWNVSGVTLTGGLTGGIQVKSESL ECCCCCCEEHHCCCEEEEEEEEEEHHHHHHHCCCCEEEEECCEEEECCCCCCEEEEHHHH QTLMAGGIAFETPQAKAPLQKRIPRFRLFASHDEANQKGAVVTIKVDRADGLRSGTPVRF HHHHHCCEEEECCCCCCCHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEE KGLDVGKIESVDLTDDLQSVILTARITEVPEKIARVGSQFWVVKPELGLIKTSNLETLVT ECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCEEEE GQYIEVQPAAKNLGPQKNFVALANPPEVTKQEAGLSLVLSAARRGSLKPGVPVTYREITV CCEEEEECHHHCCCCCCCEEEECCCCHHHHHHCCHHEEEHHHHCCCCCCCCCEEEEEEEE GKVTGYELGQTADRVLVHILIEPKYAPLVRSGSRFWNTSGVGFDIGLFKGVTVRTESLET EEECCCCCCCCCCEEEEEEEECCCCCCHHHCCCCEECCCCCEEEEHHHCCEEEEHHHHHH AIQGGIAFATPDGEQMGNPARAEQTFPLFDKFEDEWLTWAPKIPLGK HHHCCEEEECCCHHHCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]