| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ybgA [H]
Identifier: 77460955
GI number: 77460955
Start: 5339377
End: 5340339
Strand: Direct
Name: ybgA [H]
Synonym: Pfl01_4734
Alternate gene names: 77460955
Gene position: 5339377-5340339 (Clockwise)
Preceding gene: 77460954
Following gene: 77460956
Centisome position: 82.93
GC content: 60.33
Gene sequence:
>963_bases ATGTCCGACTCATCGACGTCCCTGCCAAAAATCGCCATCAGCGCCTGCCTGATGGGGGCCGAAGTTCGCTACAACGGCGG CCACAAGGAATCGCGTTTGTGCAGCCGCACCCTGGCCGAGCATTTTGAGTTCGTTCCCGTCTGTCCTGAGGTAGCGATTG GTCTCGGGATACCCCGCGAGCCGATTCGTCTGGTGGGCGACCCGCAAAAGCCTGATGCGGTCGGCACCGTCAATCCATCG ATCAATGTTACCCAGCCACTGGCCGCTTACGGCGAGAAAATGGCCGGGGAACTCAGTGACATCTGCGGCTACATCTTCAT GCAGCAATCGCCGTCCTGCGGACTGGAGCGGGTCAAGGTCTACCACGCCAACGGCGCACCGGTGAATGGTGGCGGGCGCG GCATTTACGCCGACGCGTTCTGTGCACGGCATCCGGACCTGCCGGTGGAAGAAGCCGGGCGTCTTAATGATCCGGTGCTG CGGGAAAATTTCATCACCCGCGTACTCGCCTACCGCGAATGGCAGCAAGTGCTCCAGCAAGGCTTGAGCCGCCGCGCGCT CACCGACTTCCATTCGCGCTACAAATACCTGCTGATGGCTCACAATCCGGTGCAATACAAGGCGCTGGGCAATCTGCTGG GCAACATGGGCCGGACCGACCCGATCGAACTGGGCCCACGCTATTTCAGTGAACTGATGGCGGCACTCAAGAAATGCGCC ACCCGCCGCACCCACAGCAATGTCCTGCAGCACATCAGTGGCTACCTGAAGCAGGCCATCAGCCCAGAAGACAAACAGGA AGTGCAGCACATCATCGGCCAATACCGACACGGCATCGTGCCGCTGGTGGTACCGCTGACGCTGCTCAAGCATCACTTTC GCCTCCACCCGGATCCCTACATTGCGCAGCAGGTGTACCTGCAGCCGCATCCGGAAAACCTCAGTCTGCGAAACGCCATT TGA
Upstream 100 bases:
>100_bases AACTTATACAAAAAGTTTGACTTGTACACCCATGAATCTATGCTGAGAGAATGTTGTACAGATCTATTCGTCTGTACAGG ATCAGATTCGAGGTTGTTGC
Downstream 100 bases:
>100_bases TGAACGACTCACCCGACACCAGCGCCCGGGAAGACCTCGGCGCCGACTTCAAGAAAGCCCTCGACGAAGGCTGGCTGCCG ATCCGCGAAGTCGCGCGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: ORF169; TKP [H]
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MSDSSTSLPKIAISACLMGAEVRYNGGHKESRLCSRTLAEHFEFVPVCPEVAIGLGIPREPIRLVGDPQKPDAVGTVNPS INVTQPLAAYGEKMAGELSDICGYIFMQQSPSCGLERVKVYHANGAPVNGGGRGIYADAFCARHPDLPVEEAGRLNDPVL RENFITRVLAYREWQQVLQQGLSRRALTDFHSRYKYLLMAHNPVQYKALGNLLGNMGRTDPIELGPRYFSELMAALKKCA TRRTHSNVLQHISGYLKQAISPEDKQEVQHIIGQYRHGIVPLVVPLTLLKHHFRLHPDPYIAQQVYLQPHPENLSLRNAI
Sequences:
>Translated_320_residues MSDSSTSLPKIAISACLMGAEVRYNGGHKESRLCSRTLAEHFEFVPVCPEVAIGLGIPREPIRLVGDPQKPDAVGTVNPS INVTQPLAAYGEKMAGELSDICGYIFMQQSPSCGLERVKVYHANGAPVNGGGRGIYADAFCARHPDLPVEEAGRLNDPVL RENFITRVLAYREWQQVLQQGLSRRALTDFHSRYKYLLMAHNPVQYKALGNLLGNMGRTDPIELGPRYFSELMAALKKCA TRRTHSNVLQHISGYLKQAISPEDKQEVQHIIGQYRHGIVPLVVPLTLLKHHFRLHPDPYIAQQVYLQPHPENLSLRNAI >Mature_319_residues SDSSTSLPKIAISACLMGAEVRYNGGHKESRLCSRTLAEHFEFVPVCPEVAIGLGIPREPIRLVGDPQKPDAVGTVNPSI NVTQPLAAYGEKMAGELSDICGYIFMQQSPSCGLERVKVYHANGAPVNGGGRGIYADAFCARHPDLPVEEAGRLNDPVLR ENFITRVLAYREWQQVLQQGLSRRALTDFHSRYKYLLMAHNPVQYKALGNLLGNMGRTDPIELGPRYFSELMAALKKCAT RRTHSNVLQHISGYLKQAISPEDKQEVQHIIGQYRHGIVPLVVPLTLLKHHFRLHPDPYIAQQVYLQPHPENLSLRNAI
Specific function: Unknown
COG id: COG3272
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786925, Length=159, Percent_Identity=31.4465408805031, Blast_Score=98, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013560 [H]
Pfam domain/function: PF08349 DUF1722 [H]
EC number: NA
Molecular weight: Translated: 35630; Mature: 35499
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSSTSLPKIAISACLMGAEVRYNGGHKESRLCSRTLAEHFEFVPVCPEVAIGLGIPRE CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC PIRLVGDPQKPDAVGTVNPSINVTQPLAAYGEKMAGELSDICGYIFMQQSPSCGLERVKV CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE YHANGAPVNGGGRGIYADAFCARHPDLPVEEAGRLNDPVLRENFITRVLAYREWQQVLQQ EECCCCCCCCCCCCEEHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GLSRRALTDFHSRYKYLLMAHNPVQYKALGNLLGNMGRTDPIELGPRYFSELMAALKKCA HHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHH TRRTHSNVLQHISGYLKQAISPEDKQEVQHIIGQYRHGIVPLVVPLTLLKHHFRLHPDPY HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH IAQQVYLQPHPENLSLRNAI HHHHHEECCCCCCCCCCCCC >Mature Secondary Structure SDSSTSLPKIAISACLMGAEVRYNGGHKESRLCSRTLAEHFEFVPVCPEVAIGLGIPRE CCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC PIRLVGDPQKPDAVGTVNPSINVTQPLAAYGEKMAGELSDICGYIFMQQSPSCGLERVKV CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE YHANGAPVNGGGRGIYADAFCARHPDLPVEEAGRLNDPVLRENFITRVLAYREWQQVLQQ EECCCCCCCCCCCCEEHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GLSRRALTDFHSRYKYLLMAHNPVQYKALGNLLGNMGRTDPIELGPRYFSELMAALKKCA HHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHH TRRTHSNVLQHISGYLKQAISPEDKQEVQHIIGQYRHGIVPLVVPLTLLKHHFRLHPDPY HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH IAQQVYLQPHPENLSLRNAI HHHHHEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6325460; 8905232; 9278503; 8387990 [H]