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The map label for this gene is yiaD [H]

Identifier: 77460924

GI number: 77460924

Start: 5305352

End: 5306065

Strand: Reverse

Name: yiaD [H]

Synonym: Pfl01_4703

Alternate gene names: 77460924

Gene position: 5306065-5305352 (Counterclockwise)

Preceding gene: 77460925

Following gene: 77460921

Centisome position: 82.41

GC content: 62.46

Gene sequence:

>714_bases
ATGTTCACCACGCGTCGTTTGATTATTGTCGCTACTGCCGTGGCCGTCTTGTCCGGCTGCGCCTCGCCCAACCCGTATGA
CAATCAGGGTCAGGCCGACAGTGGCTCCCAGGGCATGAGCAAAACCGCCAAGTACGGTGGCCTCGGTGCACTGGCCGGCG
CGCTGGCCGGTGCCGCCATCGACCACAACAACCGCGGCAAGGGTGCGCTGATCGGTGCAGCCGTCGTCGGTGCCTCGGCC
GCCGGTTACGGCTACTACGCTGACCAGCAGGAGAAAAAACTGCGCGCCAGCATGGCCAACACCGGGGTTGAAGTGCAGCG
TCAGGGCGACCAGATCAAGCTGATCATGCCGGGCAACATCACCTTCGCCACCGATTCGGCGAACATCGCTTCCAGCTTCT
ATCAGCCGCTGAACAATCTGGCCAACTCGCTCAAAGAGTTCAACCAGAACCAGATCGAAATCGTCGGCTACACCGACAGC
ACCGGCAGCCGCCAGCACAACATGGACCTGTCCCAGCGTCGTGCGCAGAGCGTGGCGACCTACCTGACTTCGCAGGGTGT
AAGCGGTGCCAACCTGAGCGCCCGCGGTGCCGGCCCGGATAACCCGATCGCCAGCAACGGTGACGTCAACGGCCGGGCGC
AGAACCGCCGCGTCGAGGTGAACCTGAAGGCGATCCCTGGTCAGCAATATCAGCAGGGTCAGCAATATCAATGA

Upstream 100 bases:

>100_bases
GTGCCCAGCGGAATTTTTGTGCATTGTCATGATCCAACGCCCGCACGGGCCAATTGCCAATGGCCGCGGCATCACAGAAT
GCAAAATGTAGGAGCACTCC

Downstream 100 bases:

>100_bases
TCTGATTGCCGGTGAAAAAACTGGCATGCATAAAAAAACCAGCGTGAGCTGGTTTTTTTATGGCCGGAGTATCAGGCGGT
TTGAGGCTTGGCCATCTTTC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MFTTRRLIIVATAVAVLSGCASPNPYDNQGQADSGSQGMSKTAKYGGLGALAGALAGAAIDHNNRGKGALIGAAVVGASA
AGYGYYADQQEKKLRASMANTGVEVQRQGDQIKLIMPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYTDS
TGSRQHNMDLSQRRAQSVATYLTSQGVSGANLSARGAGPDNPIASNGDVNGRAQNRRVEVNLKAIPGQQYQQGQQYQ

Sequences:

>Translated_237_residues
MFTTRRLIIVATAVAVLSGCASPNPYDNQGQADSGSQGMSKTAKYGGLGALAGALAGAAIDHNNRGKGALIGAAVVGASA
AGYGYYADQQEKKLRASMANTGVEVQRQGDQIKLIMPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYTDS
TGSRQHNMDLSQRRAQSVATYLTSQGVSGANLSARGAGPDNPIASNGDVNGRAQNRRVEVNLKAIPGQQYQQGQQYQ
>Mature_237_residues
MFTTRRLIIVATAVAVLSGCASPNPYDNQGQADSGSQGMSKTAKYGGLGALAGALAGAAIDHNNRGKGALIGAAVVGASA
AGYGYYADQQEKKLRASMANTGVEVQRQGDQIKLIMPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYTDS
TGSRQHNMDLSQRRAQSVATYLTSQGVSGANLSARGAGPDNPIASNGDVNGRAQNRRVEVNLKAIPGQQYQQGQQYQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=225, Percent_Identity=45.3333333333333, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787191, Length=133, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24817; Mature: 24817

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTTRRLIIVATAVAVLSGCASPNPYDNQGQADSGSQGMSKTAKYGGLGALAGALAGAAI
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHC
DHNNRGKGALIGAAVVGASAAGYGYYADQQEKKLRASMANTGVEVQRQGDQIKLIMPGNI
CCCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCE
TFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYTDSTGSRQHNMDLSQRRAQSVAT
EEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
YLTSQGVSGANLSARGAGPDNPIASNGDVNGRAQNRRVEVNLKAIPGQQYQQGQQYQ
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHCCCCCCC
>Mature Secondary Structure
MFTTRRLIIVATAVAVLSGCASPNPYDNQGQADSGSQGMSKTAKYGGLGALAGALAGAAI
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHC
DHNNRGKGALIGAAVVGASAAGYGYYADQQEKKLRASMANTGVEVQRQGDQIKLIMPGNI
CCCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCE
TFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYTDSTGSRQHNMDLSQRRAQSVAT
EEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
YLTSQGVSGANLSARGAGPDNPIASNGDVNGRAQNRRVEVNLKAIPGQQYQQGQQYQ
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]