Click here to switch to the map view.

The map label for this gene is yhjB [C]

Identifier: 77460779

GI number: 77460779

Start: 5141938

End: 5142738

Strand: Direct

Name: yhjB [C]

Synonym: Pfl01_4558

Alternate gene names: 77460779

Gene position: 5141938-5142738 (Clockwise)

Preceding gene: 77460776

Following gene: 77460780

Centisome position: 79.86

GC content: 60.8

Gene sequence:

>801_bases
ATGACTCTTTCGTTTGACGACATCACCTGGCACCGCGCCGTGGGGCAGTTGATCGACGCCCTCGACAAGCCGAATTTCTG
GGCGCAACTGGTGCGCCTGCTCGACCAGTACGTGCCGTTCGATAGCTGGGTGGCCCTGCTGTTCAGCGCCGACCGCCACC
CGCAGGTGTTCGCCGAATGCCCCGGTGCCGACGGCAGTCCCGACCAATTGTTTCAGGACTACTTGCGCGGTCTGTACCTG
CTCGACCCGTTCTACATCGCCTGCCGCGAGCAATCGCGCACCGGGTTGTATCGCCTGTCGGAGGTCGCACCGGAGCACTT
CGAACTGACCGAGTATTACCAGCGATACTTTCGTCTGAATGTGGTGGCCGACGAAATCCAGTTCAATTGCCAGCTCGAGG
GCGACCGCACGCTGTGTCTGTCACTGGGCAGCCAGCAACGCTTCACCGGCGAGCAGATTGCCCTGTTGTCGCTGATCCAG
CCGTGGGTGCTCGGCCTGTTGCGCCAGCGCCTGCCCTATGAAATCAACGAAACCGTGGCCTTGGCCCCGGCGCCTGCGCA
ACCGGACTGGCGGGTACAGCTCGAAGCGTCGGTGCAGCAGCTCAAGGGCGCGCAACTGACCGCCCGGGAACTGGACGTCG
GGCGCCTGATGCTCAGCGGTTGCTCCAGTAAAGAAATCGCCCGTAAGCTGGAAATCTCTGTTGAAACCGTGAAAGTCCAT
AAGAAACACATGTACAGCAAGCTGGGGATCAAATCCCAGTCGGAGCTGTTTTCGATCTTTCTGCAGGCGCAGAACGCCTG
A

Upstream 100 bases:

>100_bases
GCGCCGAAAGATTGCCCGGCGGCTGTCTGTGGGCCAGTATGCTTCGCATTCGACCGGCCCGGGAATTACGCGGCCGGGGT
AACCCAATAGGGGTAGAGGC

Downstream 100 bases:

>100_bases
CTGCCGCAAAAAAACCGTCCGAACCAAGGAAACCGTATGAGCCTGTCACTCCTGAGCCGCTACGCCTTCTTTGCCGTCTG
CGTGATGTTCACCCTCGCCA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTLSFDDITWHRAVGQLIDALDKPNFWAQLVRLLDQYVPFDSWVALLFSADRHPQVFAECPGADGSPDQLFQDYLRGLYL
LDPFYIACREQSRTGLYRLSEVAPEHFELTEYYQRYFRLNVVADEIQFNCQLEGDRTLCLSLGSQQRFTGEQIALLSLIQ
PWVLGLLRQRLPYEINETVALAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSKEIARKLEISVETVKVH
KKHMYSKLGIKSQSELFSIFLQAQNA

Sequences:

>Translated_266_residues
MTLSFDDITWHRAVGQLIDALDKPNFWAQLVRLLDQYVPFDSWVALLFSADRHPQVFAECPGADGSPDQLFQDYLRGLYL
LDPFYIACREQSRTGLYRLSEVAPEHFELTEYYQRYFRLNVVADEIQFNCQLEGDRTLCLSLGSQQRFTGEQIALLSLIQ
PWVLGLLRQRLPYEINETVALAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSKEIARKLEISVETVKVH
KKHMYSKLGIKSQSELFSIFLQAQNA
>Mature_265_residues
TLSFDDITWHRAVGQLIDALDKPNFWAQLVRLLDQYVPFDSWVALLFSADRHPQVFAECPGADGSPDQLFQDYLRGLYLL
DPFYIACREQSRTGLYRLSEVAPEHFELTEYYQRYFRLNVVADEIQFNCQLEGDRTLCLSLGSQQRFTGEQIALLSLIQP
WVLGLLRQRLPYEINETVALAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSKEIARKLEISVETVKVHK
KHMYSKLGIKSQSELFSIFLQAQNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 30458; Mature: 30327

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSFDDITWHRAVGQLIDALDKPNFWAQLVRLLDQYVPFDSWVALLFSADRHPQVFAEC
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEC
PGADGSPDQLFQDYLRGLYLLDPFYIACREQSRTGLYRLSEVAPEHFELTEYYQRYFRLN
CCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
VVADEIQFNCQLEGDRTLCLSLGSQQRFTGEQIALLSLIQPWVLGLLRQRLPYEINETVA
EEEECEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSKEIARKLEISVETVKVH
ECCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KKHMYSKLGIKSQSELFSIFLQAQNA
HHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLSFDDITWHRAVGQLIDALDKPNFWAQLVRLLDQYVPFDSWVALLFSADRHPQVFAEC
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEC
PGADGSPDQLFQDYLRGLYLLDPFYIACREQSRTGLYRLSEVAPEHFELTEYYQRYFRLN
CCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
VVADEIQFNCQLEGDRTLCLSLGSQQRFTGEQIALLSLIQPWVLGLLRQRLPYEINETVA
EEEECEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LAPAPAQPDWRVQLEASVQQLKGAQLTARELDVGRLMLSGCSSKEIARKLEISVETVKVH
ECCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KKHMYSKLGIKSQSELFSIFLQAQNA
HHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7789814 [H]