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The map label for this gene is yciR [C]

Identifier: 77460708

GI number: 77460708

Start: 5058259

End: 5060310

Strand: Direct

Name: yciR [C]

Synonym: Pfl01_4487

Alternate gene names: 77460708

Gene position: 5058259-5060310 (Clockwise)

Preceding gene: 77460707

Following gene: 77460709

Centisome position: 78.56

GC content: 61.4

Gene sequence:

>2052_bases
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTCCGGGTCGTGCTCCTGTCGGCATTGATCGTCGGCGTGGT
CTTGAGCTGCGCGCAGATCGTTTTCGATGCCTATAAAACACGCCAGGCCGTCGCCGGCGATGCCGAACGCATCCTCGACA
TGTTCCGCGATCCCTCCACCCAGGCGGTCTACAGCCTGGACCGGGAGATGGGCATGCAGGTGATCGAAGGCCTGTTCCAG
GACGACGCCGTGCGCCAGGCCTCCATCGGCCATCCCAACGAAGCGATGCTCGCGCAGAAATCCCGTGAGCTGCAGCATTC
CAACAGCCGCTGGCTGACCGACCTGATCCTCGGCCAGGAACGCACCTTCACCACCCAACTGGTGGGACGCGGCCCCTACA
GCGAATATTACGGCGACCTGAGCATCACCCTCGACACGGCCACCTACGGTCAGGGCTTCATCGTCAGTTCGGTGATCATC
TTCATTTCCGGCGTGTTGCGCGCCCTGGCCATGGGCCTGGTGCTGTACCTGGTCTATCACTGGCTGCTGACCAAACCGCT
GTCGCGGATCATCGAACACCTCACCGAGATCAACCCGGACCGCCCCAGCGAACACAAGATCCCGCAGCTCAAGGGTCACG
AAAAAAACGAACTAGGGATCTGGATCAACACCGCCAACCAGCTACTCGAATCCATCGAACGCAATACCCACCTGCGCCAC
GAAGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGATTTCCTCACCGGCCTGCCGAACCGCCAGCAATTACAGCAGCA
ACTGGACAAGATCCTGGTGGATGCCGGAAAGCTGCAACGCAGGGTCGCCGTGCTTTGCGTAGGTCTCGACGATTTCAAAG
GCATCAACGAACAATTCAGCTACCAGACCGGTGACCAGTTGCTGCTGGCCCTGGCTGACCGGCTACGCGCCCACAGCGGT
CGCCTCGGCGCCCTCGCCCGTCTCGGCGGCGACCAGTTTGCGCTGGTGCAGGCCGATATCGAACAGCCTTACGAAGCGGC
GGAACTGGCGCAAAGCATTCTCGATGACCTCGAAGCGCCGTTCGCCCTCGATCATCAGGAAATCCGCCTGCGCGCGACCA
TCGGCATCACCCTGTTCCCGGAAGATGGCGACAGCACCGAGAAGCTGCTGCAGAAAGCCGAACAGACCATGACCCTGGCC
AAGACCCGATCGCGCAACCGCTATCAGTTCTATATCGCCAGCGTCGACAGCGAGATGCGCCGCCGTCGCGAGCTGGAAAA
AGACCTGCGCGATGCCTTGCTGCGCGATCAGTTCTACCTCGTCTATCAGCCGCAGATCAGCTACCGCGATCATCGCGTGG
TCGGGGTCGAGGCCCTGATCCGCTGGCAGCATCCGGAACACGGTCTGGTGCCGCCGGACCTGTTCATCCCGCTGGCGGAA
CAGAACGGCACCATCATCGCCATCGGCGAATGGGTGCTGGATCAGGCCTGCAAGCAACTGCGCGACTGGCACGATCAGGG
CTTCGTCGATTTGCGCATGGCGGTCAACCTGTCCACCGTGCAACTGCACCACGCCGAGCTGCCCCGCGTGGTCAACAACC
TGTTGCAGATGTACCGCCTGCCACCGCGCAGCCTGGAGCTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACC
GCCGCCCAGCACCTGCTGAGCCTGCGCCGCTCCGGCGCCCTGATCGCCATCGACGACTTCGGCACCGGCTATTCGTCGCT
GAGTTATCTCAAGAGTCTGCCGCTGGACAAGATCAAGATCGACAAGAGCTTCGTCCAGGACCTGCTGGATGACGACGATG
ACGCGACCATCGTTCGCGCCATCATTCAACTGGGCAAGAGCCTGGGCATGCAGGTGATCGCCGAGGGCGTGGAAACCGCC
GAACAGGAAACCTACATCATCTCCGAAGGCTGCCACGAAGGTCAGGGCTACCACTACAGCAAACCGCTGCCGGCACGCGA
GTTGAGCATTTACCTCAAGCAGGCCCAGCGCAGCAACGCGGCCATTCTCTGA

Upstream 100 bases:

>100_bases
ACAAATTTTCCGCGGCTCGATTGTCCCTTTGACTGCCAACACGGGATTGCCAATACTCATGGCAACTTGACGCTACCCGC
ACGGAACAAGGAATAACCCT

Downstream 100 bases:

>100_bases
AATCTCCCCTGCGAAGCCCGGCAAACCCCTTGATCCGCCGGGCGTGCTCTACGCTGTTGATCCAGCGCAAACCCCGCGCA
AATAAGAAATATTTCCAGCT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 683; Mature: 683

Protein sequence:

>683_residues
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAERILDMFRDPSTQAVYSLDREMGMQVIEGLFQ
DDAVRQASIGHPNEAMLAQKSRELQHSNSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVII
FISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPDRPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRH
EAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFSYQTGDQLLLALADRLRAHSG
RLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAPFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA
KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAE
QNGTIIAIGEWVLDQACKQLRDWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDIST
AAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETA
EQETYIISEGCHEGQGYHYSKPLPARELSIYLKQAQRSNAAIL

Sequences:

>Translated_683_residues
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAERILDMFRDPSTQAVYSLDREMGMQVIEGLFQ
DDAVRQASIGHPNEAMLAQKSRELQHSNSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVII
FISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPDRPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRH
EAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFSYQTGDQLLLALADRLRAHSG
RLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAPFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA
KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAE
QNGTIIAIGEWVLDQACKQLRDWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDIST
AAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETA
EQETYIISEGCHEGQGYHYSKPLPARELSIYLKQAQRSNAAIL
>Mature_683_residues
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAERILDMFRDPSTQAVYSLDREMGMQVIEGLFQ
DDAVRQASIGHPNEAMLAQKSRELQHSNSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVII
FISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPDRPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRH
EAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFSYQTGDQLLLALADRLRAHSG
RLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAPFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA
KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAE
QNGTIIAIGEWVLDQACKQLRDWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDIST
AAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETA
EQETYIISEGCHEGQGYHYSKPLPARELSIYLKQAQRSNAAIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=438, Percent_Identity=35.3881278538813, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=35.3629976580796, Blast_Score=258, Evalue=1e-69,
Organism=Escherichia coli, GI226510982, Length=645, Percent_Identity=27.7519379844961, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=36.5461847389558, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI87081743, Length=259, Percent_Identity=35.1351351351351, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1788502, Length=267, Percent_Identity=34.0823970037453, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=32.8185328185328, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=35.4430379746835, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=34.1269841269841, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1787055, Length=504, Percent_Identity=24.6031746031746, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=33.1983805668016, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=31.2, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1788956, Length=269, Percent_Identity=27.5092936802974, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=420, Percent_Identity=23.8095238095238, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=29.0909090909091, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=250, Percent_Identity=25.2, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789650, Length=556, Percent_Identity=21.7625899280576, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081977, Length=102, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=27.4285714285714, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77167; Mature: 77167

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAERILDMFRDPST
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
QAVYSLDREMGMQVIEGLFQDDAVRQASIGHPNEAMLAQKSRELQHSNSRWLTDLILGQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC
RTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVIIFISGVLRALAMGLVLYLVYH
CCHHHHHHCCCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLTKPLSRIIEHLTEINPDRPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
EAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCHHCC
YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAP
CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
FALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDSEMR
CCCCHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAE
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEHHHHHEECCCCCCCCCCHHEEEEEC
QNGTIIAIGEWVLDQACKQLRDWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQMYRL
CCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHEEEHHHHHHHHHHHHHHHHCC
PPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEC
DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIISEGCHEGQGYHYS
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCC
KPLPARELSIYLKQAQRSNAAIL
CCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAERILDMFRDPST
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
QAVYSLDREMGMQVIEGLFQDDAVRQASIGHPNEAMLAQKSRELQHSNSRWLTDLILGQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC
RTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVIIFISGVLRALAMGLVLYLVYH
CCHHHHHHCCCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLTKPLSRIIEHLTEINPDRPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
EAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCHHCC
YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAP
CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
FALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDSEMR
CCCCHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAE
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEHHHHHEECCCCCCCCCCHHEEEEEC
QNGTIIAIGEWVLDQACKQLRDWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQMYRL
CCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHEEEHHHHHHHHHHHHHHHHCC
PPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEC
DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIISEGCHEGQGYHYS
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCC
KPLPARELSIYLKQAQRSNAAIL
CCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]