| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77460676
Identifier: 77460676
GI number: 77460676
Start: 5022462
End: 5025296
Strand: Direct
Name: 77460676
Synonym: Pfl01_4455
Alternate gene names: NA
Gene position: 5022462-5025296 (Clockwise)
Preceding gene: 77460675
Following gene: 77460677
Centisome position: 78.01
GC content: 59.51
Gene sequence:
>2835_bases ATGGCAAATAGCATTCACCTGCGCACGCCCTCGGTCACTGCCAATGATGGCCGGGGCCTGGCGCTCAGGCAGATTGCCTA TCTACGCACAGTCCCAGACGGTCCCGTGGACACCCTGATCACCCGCTTGCGCAACGATGTTGCCGGGCACCCGATCGAGC AGCAGGATCCGCGTCTGTCCGTTGCCGGTCAGATAACCGTTTTTGCGCTGAGTGGCCAGCCACTCAAGGTCCGGAGTGTC GATGCCGGCACTAACGTGGTATTGCCCGGTCGGTCGGGAGAAGTACTTCAGCGCTGGGATGCACGGGACAATCACCGGTT CACGACCTACGACCATCAACTGCGACCGTTGAACGTCAGAGAAAACGGCACACCGGATATCGAGACCTTCACCTACGCCG ACTGCTCGGCCGATCCCGGGTACAACCTGCGCGGACAGTTGATCGAACAGAGCGACGCGTCCGGTACCGTCGAGTTTCAC AGCGTCGGGATGACGGGGCATGGATTGCGTGAAACCCGCACCTTTCACGATGGCAAAGCGTTTGTCAGCCGTCGCGCCTA CGGCCCGCTGGGCACGGTGTTGACGCAGACCGATGCCGGGGGACACCAGCAACTGTCGACATACGACGTGGCCGGTCAAC TCAATCGGGTGCAATTGCAAATCAACGGTCAGAGCACTTGGCAAACCGTGTTGCAGGATGCGCAGTACAACGCCTCCGGG CAGATCATCGAACAACAGGCCGGTAATGCCGTGATCAGTCACTGGCATTACCACGCCGACGGGCGCCTGCATCGCCACTT CGCGCATAAGGGCTCAGGACCGGTGCTTCAGGACTTCGAGTACAAATACGACCGGATGGGCAACATCACCTGCATTCTCG ATCATGCCTACACGCCCACCTATTTCCGTAATCAGCGGATCAATGGTCACCGCGAGTTAACTTACGACACCCTGTACCGG CTGATTCGCGCCACCGGTTACAGCGATGCCGCGCCTTCGGACAACCTCGGACGGCCGCAGCCGACCGCCCCCGATGACCG ACGCAATTACGTCGAGCACTACAAGTACGACCACGGCGACAATCTCGTCAAGACCGTCCACGTGCGCGACGGCACCAGCC ACACCTTCGAGATGTGTATCGACTCCGCCAGCAATCGCGGCGTGCGCTGCAAACCCGGTGATCCACCACCGGATTTCAGC CGGCTGTTCGACCGTGCCGGCAACCTGCAGGCCCTGCAACCCGGCGTCCTGATGCACTGGAACAGGCGCGGCGAACTGGA CAAGGTCACCCTCGTCGATCGCAATGGCGGCAGTGCCAATGACCAAGAGTATTACCGCTACAGCCAGGGCGAGCGGGTCT ACAAGCGACACGACACCCACACGACAAAAGTCAGCCACTTCCATGAAGTGCGTTATTTGCCAGGGCTGGAGATTCGCACC CGGGACAACGGTGAGGAGCTGCACCTGATCAACCTGTCGCTGGCCAGCGGCAACGCGGTCTGCCTGCACTGGAAGGCCGG AAAACCGCCGCGGATCGATGCCGATCAACTGCGCTATACCCTCGCAGATCATCTGGGGTCGGTCTCGCTGGAACTGGATC GACAGGCGCAGATAATCAGCCGGGAAGGCTACTTGTCATTCGGTGCCACGGCCTGGATGGCGGCGCGTGCGCTGATCGAA GTGGATTACCGGTTCCTCCGTTACTCGGGCAAGGAAATGGATGTCACCCGGTTGTATTACTACGGCGCCCGTTACTACGC CTGCTGGCTGGGGCGCTGGGTCAGCGCCGATCCGGCAGGCCCTGTAGACGGGCCTAATCTGTACGCGTTCGTGGGGAACA ACCCGGTCAATCACGTCGACGTCAACGGCGAAGCCAAAGTCAAATGGCCCACCGTGGCAGATATCAATGCAGGCGTAGAC CGGATCATTGCCTCGCAAAACGCCAGCTACTCCAAAAACAGGCAGGCCATCGCAACGCGTCACATGAAAGACCAGATGAG CCAACAGGTGACGCGTCACATTGAAATACTCGGGCTCACCAAGGAGCGCGCAAGCGACGCTGCAAAACAACTCGACAGAA TGGGTTCCGGTCTTGATGTGGCGCTTGCCGCAACCCGCAGAACCCTGACGCTGATCATCGGCAAGGGCATCAGCTATGGC GTGGGAGTCGGCGTCGGGATCGGCGCCCAGGCCCTGGGAGCCGTAGCGCCCGGCGTGGGAAATGTGGTGGGGGCCGGCTT GGGCATCGGCGCAAAAATTGCGGTCAGCGGCCTGATCGACTATGTGGCCGAACGAACGGGCATGAGCGCGCCGGTCAACT TGAAAACCAGCAAACTGACGGCGAAAAAGATCATTCAAAAAGCCGAATACAAGCAGATGGAGCCGTTTGAATATCTGAAA GCCAAATACCAGAACATGAAACCGGACAGCCAGAAATCCCAGCTGAAGTTTTCCAAGGAAGCTGCGACTCAGGCTTCCGG GTATATCTTGAAGTCGGCGCTGACCTCCATGCCTTCCGAAGCGGTCAGCGCTATCGGCACCGGCGTTGCTGTGCTGCTGG GATTGCCAGAGATTGTGGATGAAACCATGGGCGCGCTCTCGGACAAATCAGGCGCGAAGATGCTGGAGTTCGAACGCCAG ATTCTTGGGCTCGTTGATGAGATCGAATCGAGCAATGCCACGATTCATCGATTTGCCAATGCACTCTCCACGACCAGTAT CGGCGGGATTGACCTGGATGACCTGGATCGGCAGACAAGGCACACCACTGACATGCTCCATGGTCTGGCTGACACGGTTC GACACCACCGGGCCAGCCAAAAAGCTGCAGCGTGA
Upstream 100 bases:
>100_bases AGAGGACTGGCCTACTACAAGGAGATGGGCACCACGGACAATCAATACTTGCTGAGCCAGGCTCATGTTAAATCGCCGTC CCGCAACCGGACCACGTGAA
Downstream 100 bases:
>100_bases ACTCAAATGAACCCATCCATTGACTCGTACACACCATCAGTGTCGGCCACTCACCCTCAAGGTCAGGCCATCAGACAAAT TGCCTACCTGCGCAAGGTGG
Product: insecticidal toxin protein
Products: NA
Alternate protein names: Insecticidal xin Protein; Insecticidal xin Complex; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; YD Repeat Protein; Rhs Family Protein-Like Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticial xin; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex Protein Tccc
Number of amino acids: Translated: 944; Mature: 943
Protein sequence:
>944_residues MANSIHLRTPSVTANDGRGLALRQIAYLRTVPDGPVDTLITRLRNDVAGHPIEQQDPRLSVAGQITVFALSGQPLKVRSV DAGTNVVLPGRSGEVLQRWDARDNHRFTTYDHQLRPLNVRENGTPDIETFTYADCSADPGYNLRGQLIEQSDASGTVEFH SVGMTGHGLRETRTFHDGKAFVSRRAYGPLGTVLTQTDAGGHQQLSTYDVAGQLNRVQLQINGQSTWQTVLQDAQYNASG QIIEQQAGNAVISHWHYHADGRLHRHFAHKGSGPVLQDFEYKYDRMGNITCILDHAYTPTYFRNQRINGHRELTYDTLYR LIRATGYSDAAPSDNLGRPQPTAPDDRRNYVEHYKYDHGDNLVKTVHVRDGTSHTFEMCIDSASNRGVRCKPGDPPPDFS RLFDRAGNLQALQPGVLMHWNRRGELDKVTLVDRNGGSANDQEYYRYSQGERVYKRHDTHTTKVSHFHEVRYLPGLEIRT RDNGEELHLINLSLASGNAVCLHWKAGKPPRIDADQLRYTLADHLGSVSLELDRQAQIISREGYLSFGATAWMAARALIE VDYRFLRYSGKEMDVTRLYYYGARYYACWLGRWVSADPAGPVDGPNLYAFVGNNPVNHVDVNGEAKVKWPTVADINAGVD RIIASQNASYSKNRQAIATRHMKDQMSQQVTRHIEILGLTKERASDAAKQLDRMGSGLDVALAATRRTLTLIIGKGISYG VGVGVGIGAQALGAVAPGVGNVVGAGLGIGAKIAVSGLIDYVAERTGMSAPVNLKTSKLTAKKIIQKAEYKQMEPFEYLK AKYQNMKPDSQKSQLKFSKEAATQASGYILKSALTSMPSEAVSAIGTGVAVLLGLPEIVDETMGALSDKSGAKMLEFERQ ILGLVDEIESSNATIHRFANALSTTSIGGIDLDDLDRQTRHTTDMLHGLADTVRHHRASQKAAA
Sequences:
>Translated_944_residues MANSIHLRTPSVTANDGRGLALRQIAYLRTVPDGPVDTLITRLRNDVAGHPIEQQDPRLSVAGQITVFALSGQPLKVRSV DAGTNVVLPGRSGEVLQRWDARDNHRFTTYDHQLRPLNVRENGTPDIETFTYADCSADPGYNLRGQLIEQSDASGTVEFH SVGMTGHGLRETRTFHDGKAFVSRRAYGPLGTVLTQTDAGGHQQLSTYDVAGQLNRVQLQINGQSTWQTVLQDAQYNASG QIIEQQAGNAVISHWHYHADGRLHRHFAHKGSGPVLQDFEYKYDRMGNITCILDHAYTPTYFRNQRINGHRELTYDTLYR LIRATGYSDAAPSDNLGRPQPTAPDDRRNYVEHYKYDHGDNLVKTVHVRDGTSHTFEMCIDSASNRGVRCKPGDPPPDFS RLFDRAGNLQALQPGVLMHWNRRGELDKVTLVDRNGGSANDQEYYRYSQGERVYKRHDTHTTKVSHFHEVRYLPGLEIRT RDNGEELHLINLSLASGNAVCLHWKAGKPPRIDADQLRYTLADHLGSVSLELDRQAQIISREGYLSFGATAWMAARALIE VDYRFLRYSGKEMDVTRLYYYGARYYACWLGRWVSADPAGPVDGPNLYAFVGNNPVNHVDVNGEAKVKWPTVADINAGVD RIIASQNASYSKNRQAIATRHMKDQMSQQVTRHIEILGLTKERASDAAKQLDRMGSGLDVALAATRRTLTLIIGKGISYG VGVGVGIGAQALGAVAPGVGNVVGAGLGIGAKIAVSGLIDYVAERTGMSAPVNLKTSKLTAKKIIQKAEYKQMEPFEYLK AKYQNMKPDSQKSQLKFSKEAATQASGYILKSALTSMPSEAVSAIGTGVAVLLGLPEIVDETMGALSDKSGAKMLEFERQ ILGLVDEIESSNATIHRFANALSTTSIGGIDLDDLDRQTRHTTDMLHGLADTVRHHRASQKAAA >Mature_943_residues ANSIHLRTPSVTANDGRGLALRQIAYLRTVPDGPVDTLITRLRNDVAGHPIEQQDPRLSVAGQITVFALSGQPLKVRSVD AGTNVVLPGRSGEVLQRWDARDNHRFTTYDHQLRPLNVRENGTPDIETFTYADCSADPGYNLRGQLIEQSDASGTVEFHS VGMTGHGLRETRTFHDGKAFVSRRAYGPLGTVLTQTDAGGHQQLSTYDVAGQLNRVQLQINGQSTWQTVLQDAQYNASGQ IIEQQAGNAVISHWHYHADGRLHRHFAHKGSGPVLQDFEYKYDRMGNITCILDHAYTPTYFRNQRINGHRELTYDTLYRL IRATGYSDAAPSDNLGRPQPTAPDDRRNYVEHYKYDHGDNLVKTVHVRDGTSHTFEMCIDSASNRGVRCKPGDPPPDFSR LFDRAGNLQALQPGVLMHWNRRGELDKVTLVDRNGGSANDQEYYRYSQGERVYKRHDTHTTKVSHFHEVRYLPGLEIRTR DNGEELHLINLSLASGNAVCLHWKAGKPPRIDADQLRYTLADHLGSVSLELDRQAQIISREGYLSFGATAWMAARALIEV DYRFLRYSGKEMDVTRLYYYGARYYACWLGRWVSADPAGPVDGPNLYAFVGNNPVNHVDVNGEAKVKWPTVADINAGVDR IIASQNASYSKNRQAIATRHMKDQMSQQVTRHIEILGLTKERASDAAKQLDRMGSGLDVALAATRRTLTLIIGKGISYGV GVGVGIGAQALGAVAPGVGNVVGAGLGIGAKIAVSGLIDYVAERTGMSAPVNLKTSKLTAKKIIQKAEYKQMEPFEYLKA KYQNMKPDSQKSQLKFSKEAATQASGYILKSALTSMPSEAVSAIGTGVAVLLGLPEIVDETMGALSDKSGAKMLEFERQI LGLVDEIESSNATIHRFANALSTTSIGGIDLDDLDRQTRHTTDMLHGLADTVRHHRASQKAAA
Specific function: Unknown
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104063; Mature: 103932
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSIHLRTPSVTANDGRGLALRQIAYLRTVPDGPVDTLITRLRNDVAGHPIEQQDPRLS CCCCEEEECCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE VAGQITVFALSGQPLKVRSVDAGTNVVLPGRSGEVLQRWDARDNHRFTTYDHQLRPLNVR EECEEEEEEECCCCEEEEEECCCCEEEECCCCCHHHHHCCCCCCCEEEEECCCEEEECCC ENGTPDIETFTYADCSADPGYNLRGQLIEQSDASGTVEFHSVGMTGHGLRETRTFHDGKA CCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCHHHCCCCCCHH FVSRRAYGPLGTVLTQTDAGGHQQLSTYDVAGQLNRVQLQINGQSTWQTVLQDAQYNASG HHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCC QIIEQQAGNAVISHWHYHADGRLHRHFAHKGSGPVLQDFEYKYDRMGNITCILDHAYTPT CEEHHHCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHCCCHHHHCCCCEEEEEECCCCCC YFRNQRINGHRELTYDTLYRLIRATGYSDAAPSDNLGRPQPTAPDDRRNYVEHYKYDHGD HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC NLVKTVHVRDGTSHTFEMCIDSASNRGVRCKPGDPPPDFSRLFDRAGNLQALQPGVLMHW CEEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCCCEEECCCEEEEE NRRGELDKVTLVDRNGGSANDQEYYRYSQGERVYKRHDTHTTKVSHFHEVRYLPGLEIRT CCCCCCCEEEEEECCCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEE RDNGEELHLINLSLASGNAVCLHWKAGKPPRIDADQLRYTLADHLGSVSLELDRQAQIIS CCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHC REGYLSFGATAWMAARALIEVDYRFLRYSGKEMDVTRLYYYGARYYACWLGRWVSADPAG CCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCC PVDGPNLYAFVGNNPVNHVDVNGEAKVKWPTVADINAGVDRIIASQNASYSKNRQAIATR CCCCCCEEEEECCCCCCEEECCCCEEEECCCEECCCCCHHHHHHCCCCCCCCCHHHHHHH HMKDQMSQQVTRHIEILGLTKERASDAAKQLDRMGSGLDVALAATRRTLTLIIGKGISYG HHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCCCCC VGVGVGIGAQALGAVAPGVGNVVGAGLGIGAKIAVSGLIDYVAERTGMSAPVNLKTSKLT CCCCCCCCHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH AKKIIQKAEYKQMEPFEYLKAKYQNMKPDSQKSQLKFSKEAATQASGYILKSALTSMPSE HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH AVSAIGTGVAVLLGLPEIVDETMGALSDKSGAKMLEFERQILGLVDEIESSNATIHRFAN HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH ALSTTSIGGIDLDDLDRQTRHTTDMLHGLADTVRHHRASQKAAA HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ANSIHLRTPSVTANDGRGLALRQIAYLRTVPDGPVDTLITRLRNDVAGHPIEQQDPRLS CCCEEEECCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE VAGQITVFALSGQPLKVRSVDAGTNVVLPGRSGEVLQRWDARDNHRFTTYDHQLRPLNVR EECEEEEEEECCCCEEEEEECCCCEEEECCCCCHHHHHCCCCCCCEEEEECCCEEEECCC ENGTPDIETFTYADCSADPGYNLRGQLIEQSDASGTVEFHSVGMTGHGLRETRTFHDGKA CCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCHHHCCCCCCHH FVSRRAYGPLGTVLTQTDAGGHQQLSTYDVAGQLNRVQLQINGQSTWQTVLQDAQYNASG HHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCC QIIEQQAGNAVISHWHYHADGRLHRHFAHKGSGPVLQDFEYKYDRMGNITCILDHAYTPT CEEHHHCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHCCCHHHHCCCCEEEEEECCCCCC YFRNQRINGHRELTYDTLYRLIRATGYSDAAPSDNLGRPQPTAPDDRRNYVEHYKYDHGD HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC NLVKTVHVRDGTSHTFEMCIDSASNRGVRCKPGDPPPDFSRLFDRAGNLQALQPGVLMHW CEEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCCCEEECCCEEEEE NRRGELDKVTLVDRNGGSANDQEYYRYSQGERVYKRHDTHTTKVSHFHEVRYLPGLEIRT CCCCCCCEEEEEECCCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEE RDNGEELHLINLSLASGNAVCLHWKAGKPPRIDADQLRYTLADHLGSVSLELDRQAQIIS CCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHC REGYLSFGATAWMAARALIEVDYRFLRYSGKEMDVTRLYYYGARYYACWLGRWVSADPAG CCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCC PVDGPNLYAFVGNNPVNHVDVNGEAKVKWPTVADINAGVDRIIASQNASYSKNRQAIATR CCCCCCEEEEECCCCCCEEECCCCEEEECCCEECCCCCHHHHHHCCCCCCCCCHHHHHHH HMKDQMSQQVTRHIEILGLTKERASDAAKQLDRMGSGLDVALAATRRTLTLIIGKGISYG HHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCCCCC VGVGVGIGAQALGAVAPGVGNVVGAGLGIGAKIAVSGLIDYVAERTGMSAPVNLKTSKLT CCCCCCCCHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH AKKIIQKAEYKQMEPFEYLKAKYQNMKPDSQKSQLKFSKEAATQASGYILKSALTSMPSE HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH AVSAIGTGVAVLLGLPEIVDETMGALSDKSGAKMLEFERQILGLVDEIESSNATIHRFAN HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH ALSTTSIGGIDLDDLDRQTRHTTDMLHGLADTVRHHRASQKAAA HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA