| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77460655
Identifier: 77460655
GI number: 77460655
Start: 4994663
End: 4995661
Strand: Direct
Name: 77460655
Synonym: Pfl01_4434
Alternate gene names: NA
Gene position: 4994663-4995661 (Clockwise)
Preceding gene: 77460654
Following gene: 77460658
Centisome position: 77.58
GC content: 63.06
Gene sequence:
>999_bases TTGAGTCGCGGCATTCTGTTGCTGATCGGCCTGCTGGTGGCCGTGGCGGTTCCCGTCCTGCTCGGGGGCGGCGAAACCTG GGAGCGCCTGCAGGCATTTCCGCTGCGCTGGCTGTTGATCATGTTCGCCATGGTTCTGCTGTGTTGGGGCATCAACACCT TGCGCTTGCGGCTATTGCTCGGCGATCAGCGTGAGCGGGTCACGCCCGTCAAAAGTCTTGGGGTAGTAATGGCTGCCGAA TTCGCCTGGTGCGCCACGCCCGGCGGCAGCGGCGGGCCGTTGACGATCATGGCATTGCTGGCCCGCAGCGGCGTGCGCCC GGCCCGGGGCAGTGCCGTGTTTGCGATGGATCAGTTGAGTGATCTGCTGTTTTTTCTCTGCGCCCTGAGCGGGATCCTGA TCTACGCGCTGTTCCAGCATCTCAGCGACCGTATGGAATGGCTGCTGACTGTCAGCGCCGTGTCATTGTCCGGGGGCTTG CTCAGTTGTGTGCTGGTCGCGCGCTATCACCGCCGTTTGATCCGTTTGAGCGGACGACTGCTGGCCGGGATGAACGTCGA ACCGCGTACCCGACGGCGCTGGGCGCGGCAGTTGCTGCACTTTCTGGCCGCGTTCACCGATGCGCTGAAATTGCCGTGGC AGACGTTGATCAAGGTGTTCGTCCTGACCTGCGTGCATTGGTCGCTGCGCTATAGCGTGCTGTATCTGGCGTTGCGCGGT CTGGGGGCGGATGTGCAGTGGGCCTGGACGTTTCTGATCCAGATGCTTTCGCTGGGGGCGGGGCAATTCAGCCTGTTGCC GGGCGGTGCCGGTGCAGCGGAGTTGACCTCGGCGGCGCTGCTGGCGCCGATGGTCGGCAAATCCACCGCGGCGGCGGCTA TTCTGATCTGGCGGGTGGTGACGTATTACTTCTATCTGCTGGTCGGTGGCCCGGTGTTTCTACTGATGCTGGGCCGGCCA TTGCTGAAAAAGCTGCTGAGCGTCAGACAGGCTTCTTGA
Upstream 100 bases:
>100_bases ACTGGTGGCGCACCCTTGAACGACTATTGGCGGACGGACGCGTGCCCATGACCAAAATCGACTGGCTGACGCGCCAGCGC ATTCAAGCCGAGCGTGCCGC
Downstream 100 bases:
>100_bases GGTCATCGTCTTCGTCCTTGAGTTGTTCCCACAGTTCGGCAGCGCCGGGAAACTCCGTGCCGTCCTCCGGACTCAGGTCA TCCGGGTCATAGCGGCTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MSRGILLLIGLLVAVAVPVLLGGGETWERLQAFPLRWLLIMFAMVLLCWGINTLRLRLLLGDQRERVTPVKSLGVVMAAE FAWCATPGGSGGPLTIMALLARSGVRPARGSAVFAMDQLSDLLFFLCALSGILIYALFQHLSDRMEWLLTVSAVSLSGGL LSCVLVARYHRRLIRLSGRLLAGMNVEPRTRRRWARQLLHFLAAFTDALKLPWQTLIKVFVLTCVHWSLRYSVLYLALRG LGADVQWAWTFLIQMLSLGAGQFSLLPGGAGAAELTSAALLAPMVGKSTAAAAILIWRVVTYYFYLLVGGPVFLLMLGRP LLKKLLSVRQAS
Sequences:
>Translated_332_residues MSRGILLLIGLLVAVAVPVLLGGGETWERLQAFPLRWLLIMFAMVLLCWGINTLRLRLLLGDQRERVTPVKSLGVVMAAE FAWCATPGGSGGPLTIMALLARSGVRPARGSAVFAMDQLSDLLFFLCALSGILIYALFQHLSDRMEWLLTVSAVSLSGGL LSCVLVARYHRRLIRLSGRLLAGMNVEPRTRRRWARQLLHFLAAFTDALKLPWQTLIKVFVLTCVHWSLRYSVLYLALRG LGADVQWAWTFLIQMLSLGAGQFSLLPGGAGAAELTSAALLAPMVGKSTAAAAILIWRVVTYYFYLLVGGPVFLLMLGRP LLKKLLSVRQAS >Mature_331_residues SRGILLLIGLLVAVAVPVLLGGGETWERLQAFPLRWLLIMFAMVLLCWGINTLRLRLLLGDQRERVTPVKSLGVVMAAEF AWCATPGGSGGPLTIMALLARSGVRPARGSAVFAMDQLSDLLFFLCALSGILIYALFQHLSDRMEWLLTVSAVSLSGGLL SCVLVARYHRRLIRLSGRLLAGMNVEPRTRRRWARQLLHFLAAFTDALKLPWQTLIKVFVLTCVHWSLRYSVLYLALRGL GADVQWAWTFLIQMLSLGAGQFSLLPGGAGAAELTSAALLAPMVGKSTAAAAILIWRVVTYYFYLLVGGPVFLLMLGRPL LKKLLSVRQAS
Specific function: Unknown
COG id: COG0392
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0104 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022791 - InterPro: IPR005242 [H]
Pfam domain/function: PF03706 UPF0104 [H]
EC number: NA
Molecular weight: Translated: 36417; Mature: 36286
Theoretical pI: Translated: 11.35; Mature: 11.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGILLLIGLLVAVAVPVLLGGGETWERLQAFPLRWLLIMFAMVLLCWGINTLRLRLLL CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GDQRERVTPVKSLGVVMAAEFAWCATPGGSGGPLTIMALLARSGVRPARGSAVFAMDQLS CCCHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHH DLLFFLCALSGILIYALFQHLSDRMEWLLTVSAVSLSGGLLSCVLVARYHRRLIRLSGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHH LAGMNVEPRTRRRWARQLLHFLAAFTDALKLPWQTLIKVFVLTCVHWSLRYSVLYLALRG HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGADVQWAWTFLIQMLSLGAGQFSLLPGGAGAAELTSAALLAPMVGKSTAAAAILIWRVV CCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH TYYFYLLVGGPVFLLMLGRPLLKKLLSVRQAS HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC >Mature Secondary Structure SRGILLLIGLLVAVAVPVLLGGGETWERLQAFPLRWLLIMFAMVLLCWGINTLRLRLLL CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GDQRERVTPVKSLGVVMAAEFAWCATPGGSGGPLTIMALLARSGVRPARGSAVFAMDQLS CCCHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHH DLLFFLCALSGILIYALFQHLSDRMEWLLTVSAVSLSGGLLSCVLVARYHRRLIRLSGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHH LAGMNVEPRTRRRWARQLLHFLAAFTDALKLPWQTLIKVFVLTCVHWSLRYSVLYLALRG HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGADVQWAWTFLIQMLSLGAGQFSLLPGGAGAAELTSAALLAPMVGKSTAAAAILIWRVV CCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH TYYFYLLVGGPVFLLMLGRPLLKKLLSVRQAS HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]