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The map label for this gene is yeaM [H]

Identifier: 77460522

GI number: 77460522

Start: 4858859

End: 4859626

Strand: Direct

Name: yeaM [H]

Synonym: Pfl01_4301

Alternate gene names: 77460522

Gene position: 4858859-4859626 (Clockwise)

Preceding gene: 77460519

Following gene: 77460523

Centisome position: 75.47

GC content: 61.46

Gene sequence:

>768_bases
ATGCGCAATGTTTCGATCAATCTGCTGGATGACACGCGGCGCCCGGTGGTGGCGATCGGTACGGATTATTCCCACGGCTA
TTTGTTGCCACGTCATACGCATCGGCGGGCGCAGTTGTTGTACGGCGCGACCGGGGTGATGCAGGTCAGTACGCATGATG
GCAACTGGGTGGTGCCGCCGCAGCGGGCGGTGTGGATTCCGCCGGGGGTAGCGCATGAGGTGTTGATGTTGGGGGTCAGC
ACTCGCAGTTTGTATATCGAGCCGGAGGCCGTGGATCTGGGTGAGCGTTGTCAGGTGATCAGTGTGTCGCCGCTAATGCG
GCACTTGCTGATGGAGGCGGTGGAGCTGCCGCTGACCTATGACCTGGCCGGGCGTGACGGCGTGCTGATCGACTTGTTGC
TGCATGAATTGGTGCGCAGTGCTCCGTTGCCGTTGCATATCCCGCTGCCGCCTGACGGAAGGCTGCTCGAACTGTGTCAG
ACCTTTCTGCATCAGCCGAATGCCCACCAATCACCCCTGCATTGGGCCGATCAGCTGCACGTAAGCTTACGTACCTTCAA
CAGAATGTTTCGTCAGCAGACCGGCCTGAGTTTCAGTCAATGGCGTCAGCGCGCCTGCGTGGTATTGGCGCTGGCACGGC
TGGCGGCGGGTGAAGCGGTGACGCGGATTGCCCTGGATTTCGGCTATGACAGCCCGGCGGCGTTCTCGACGATGTTCCGC
CGGATCCTCGGTCAGGCACCGTCCGTCTGGTTGGAGGCGGCGAACTAG

Upstream 100 bases:

>100_bases
GTTGTTTGAGAGCGGTCGACGATAGAGCGGCGGCGCTTGGCCTGCTTCAGCAAGTCAGCCAATAATGTTTGCGTTTACGC
CAACTGCTGGGTGCCGCTCG

Downstream 100 bases:

>100_bases
GGCAAATCAAAAAATGCGTTTGATCCCGGCCGAAAACAACTGTACAAAAACACAGTACATTTTCCATCAGCACTCTCGAG
CCCGGAGCACACCATGGCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MRNVSINLLDDTRRPVVAIGTDYSHGYLLPRHTHRRAQLLYGATGVMQVSTHDGNWVVPPQRAVWIPPGVAHEVLMLGVS
TRSLYIEPEAVDLGERCQVISVSPLMRHLLMEAVELPLTYDLAGRDGVLIDLLLHELVRSAPLPLHIPLPPDGRLLELCQ
TFLHQPNAHQSPLHWADQLHVSLRTFNRMFRQQTGLSFSQWRQRACVVLALARLAAGEAVTRIALDFGYDSPAAFSTMFR
RILGQAPSVWLEAAN

Sequences:

>Translated_255_residues
MRNVSINLLDDTRRPVVAIGTDYSHGYLLPRHTHRRAQLLYGATGVMQVSTHDGNWVVPPQRAVWIPPGVAHEVLMLGVS
TRSLYIEPEAVDLGERCQVISVSPLMRHLLMEAVELPLTYDLAGRDGVLIDLLLHELVRSAPLPLHIPLPPDGRLLELCQ
TFLHQPNAHQSPLHWADQLHVSLRTFNRMFRQQTGLSFSQWRQRACVVLALARLAAGEAVTRIALDFGYDSPAAFSTMFR
RILGQAPSVWLEAAN
>Mature_255_residues
MRNVSINLLDDTRRPVVAIGTDYSHGYLLPRHTHRRAQLLYGATGVMQVSTHDGNWVVPPQRAVWIPPGVAHEVLMLGVS
TRSLYIEPEAVDLGERCQVISVSPLMRHLLMEAVELPLTYDLAGRDGVLIDLLLHELVRSAPLPLHIPLPPDGRLLELCQ
TFLHQPNAHQSPLHWADQLHVSLRTFNRMFRQQTGLSFSQWRQRACVVLALARLAAGEAVTRIALDFGYDSPAAFSTMFR
RILGQAPSVWLEAAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=33.6322869955157, Blast_Score=124, Evalue=6e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28548; Mature: 28548

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNVSINLLDDTRRPVVAIGTDYSHGYLLPRHTHRRAQLLYGATGVMQVSTHDGNWVVPP
CCCEEEEEECCCCCCEEEEECCCCCCEECCCCCHHHHHHHCCCCEEEEEEECCCCEEECC
QRAVWIPPGVAHEVLMLGVSTRSLYIEPEAVDLGERCQVISVSPLMRHLLMEAVELPLTY
CCEEECCCCHHHHHHHEECCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEE
DLAGRDGVLIDLLLHELVRSAPLPLHIPLPPDGRLLELCQTFLHQPNAHQSPLHWADQLH
EECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
VSLRTFNRMFRQQTGLSFSQWRQRACVVLALARLAAGEAVTRIALDFGYDSPAAFSTMFR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCHHHHHHHH
RILGQAPSVWLEAAN
HHHCCCCCEEEEECC
>Mature Secondary Structure
MRNVSINLLDDTRRPVVAIGTDYSHGYLLPRHTHRRAQLLYGATGVMQVSTHDGNWVVPP
CCCEEEEEECCCCCCEEEEECCCCCCEECCCCCHHHHHHHCCCCEEEEEEECCCCEEECC
QRAVWIPPGVAHEVLMLGVSTRSLYIEPEAVDLGERCQVISVSPLMRHLLMEAVELPLTY
CCEEECCCCHHHHHHHEECCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEE
DLAGRDGVLIDLLLHELVRSAPLPLHIPLPPDGRLLELCQTFLHQPNAHQSPLHWADQLH
EECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
VSLRTFNRMFRQQTGLSFSQWRQRACVVLALARLAAGEAVTRIALDFGYDSPAAFSTMFR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCHHHHHHHH
RILGQAPSVWLEAAN
HHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]