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The map label for this gene is glxA [H]

Identifier: 77460508

GI number: 77460508

Start: 4843567

End: 4844547

Strand: Reverse

Name: glxA [H]

Synonym: Pfl01_4287

Alternate gene names: 77460508

Gene position: 4844547-4843567 (Counterclockwise)

Preceding gene: 77460509

Following gene: 77460506

Centisome position: 75.24

GC content: 62.79

Gene sequence:

>981_bases
ATGACTGCCCATCGAATTGGTTTCCTGATTTGGCCCAGCACTAAAGCTCTGACTTTGGCGCTGGCAGAGGAGGCCTTGCG
TGTTGCCCAGCGTGTGCATCCGGACGTGGTTTACGAGTTGTCCTTCCTGCAGGCCGAAGCACCGGCCGAGGGTGAATGGC
AACTGCCCGGCGAACCCTGGGCCGGCAAGCTCGAAAACTTCCAGAAACTGTTCCTGCTCGCCGATGAGCCACCGACCACG
TTGGCGCCGGCACTCAGCAGCGCACTCAAGCAACTGGTGCGCGCCGGTTGTGTGATCGGCGGTCTGTCGGCCGGTGTGTA
TCCGCTGGCGCAACTCGGTCTGCTCGACGGTTACCGCGCGGCGGTGCACTGGCGCTGGCAGGACGATTTCGCCGAACGCT
TCCCGAAAGTCATCGCCACCAGCCATTTGTTCGACTGGGATCGAGATCGCCTGACCGCGTGCGGCGGCATGTCGGTGCTC
GATCTGTTGCTGGCAGTTTTGGCTCGCGATCACGGTGCGGAACTGGCCGGTGCGGTTTCCGAAGAACTGGTGGTCGAACG
CATCCGCGAAGGCGGCGAGCGTCAGCGCATTCCGTTGCAGAACCGTCTCGGCTCCAGTCATCCGAAGCTCACCCAGGCGG
TGCTGCTGATGGAAGCCAACATCGAAGAGCCGCTGACCACCGACGAAATCGCCCAGCACGTGTGCGTGTCCCGTCGGCAG
CTGGAGCGGATCTTCAAGCAATACCTCAACCGCGTGCCGAGCCAGTACTACCTGGAACTGCGCCTGAACAAGGCCCGGCA
GATGTTGATGCAGACCAGCAAGTCGATCATCCAGATCGGCCTGTCGTGCGGATTCTCGTCGGGGCCGCATTTCTCCAGCG
CCTACCGCAACTTCTTCGGCGCCACGCCGCGGGAAGACCGCAACCAGCGGCGCAGCAGCAGTCCTTTCGAACTGTCGTCG
GTGCCGCCAGAGCGCGGTTGA

Upstream 100 bases:

>100_bases
ATGCACCAGATTAGGTCATGCTGCGCAGCGCGCCAGATGGTCTAATTTGGTTGCAGCCGATTTCGGTTTTTCCCTCTGTT
TACGTTTCGGATCGCCCGCC

Downstream 100 bases:

>100_bases
CCGGTGAGCCGCAGCGCCATGGAGATCGACCCCATGGCGCTGGCGTTTCAGATGTCCTTCAATCTTCGATTTCGGCACTG
GGGCGAGTTTGCACCTGTGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTAHRIGFLIWPSTKALTLALAEEALRVAQRVHPDVVYELSFLQAEAPAEGEWQLPGEPWAGKLENFQKLFLLADEPPTT
LAPALSSALKQLVRAGCVIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMSVL
DLLLAVLARDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVCVSRRQ
LERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSSSPFELSS
VPPERG

Sequences:

>Translated_326_residues
MTAHRIGFLIWPSTKALTLALAEEALRVAQRVHPDVVYELSFLQAEAPAEGEWQLPGEPWAGKLENFQKLFLLADEPPTT
LAPALSSALKQLVRAGCVIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMSVL
DLLLAVLARDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVCVSRRQ
LERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSSSPFELSS
VPPERG
>Mature_325_residues
TAHRIGFLIWPSTKALTLALAEEALRVAQRVHPDVVYELSFLQAEAPAEGEWQLPGEPWAGKLENFQKLFLLADEPPTTL
APALSSALKQLVRAGCVIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMSVLD
LLLAVLARDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVCVSRRQL
ERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSSSPFELSSV
PPERG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=112, Percent_Identity=33.9285714285714, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790559, Length=109, Percent_Identity=30.2752293577982, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36411; Mature: 36280

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAHRIGFLIWPSTKALTLALAEEALRVAQRVHPDVVYELSFLQAEAPAEGEWQLPGEPW
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
AGKLENFQKLFLLADEPPTTLAPALSSALKQLVRAGCVIGGLSAGVYPLAQLGLLDGYRA
CCHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMSVLDLLLAVLARDHGAELAGAVS
EEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHH
EELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVCVSRRQ
HHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNFFG
HHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
ATPREDRNQRRSSSPFELSSVPPERG
CCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAHRIGFLIWPSTKALTLALAEEALRVAQRVHPDVVYELSFLQAEAPAEGEWQLPGEPW
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
AGKLENFQKLFLLADEPPTTLAPALSSALKQLVRAGCVIGGLSAGVYPLAQLGLLDGYRA
CCHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMSVLDLLLAVLARDHGAELAGAVS
EEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHH
EELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVCVSRRQ
HHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNFFG
HHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
ATPREDRNQRRSSSPFELSSVPPERG
CCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]