| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yceA [C]
Identifier: 77460311
GI number: 77460311
Start: 4627027
End: 4627968
Strand: Reverse
Name: yceA [C]
Synonym: Pfl01_4090
Alternate gene names: 77460311
Gene position: 4627968-4627027 (Counterclockwise)
Preceding gene: 77460312
Following gene: 77460310
Centisome position: 71.88
GC content: 58.49
Gene sequence:
>942_bases ATGACACAACCGATTGTCGTGGCGGCACTGTACAAGTTCGTCACCCTCGAAGATTACGTCAACCTGCGCGAGCCCCTGCT GCAAGCGATGGTCGACAACGGCATCAAAGGCACCCTGCTGATCGCCGAAGAAGGCATCAACGGCACGGTTTCCGGCAGCC GTGAAGGCATCGACGGCCTGCTGGCCTGGCTGCGCAACGATCCGCGCATGGTCGATATCGATCACAAGGAATCGTACTGC GACGAGCAGCCGTTCTATCGCACCAAGGTCAAGCTCAAGAAAGAGATCGTGACCCTGGGCGTTGAAGGCGTCGACCCGAA CAAGAAAGTCGGCACCTACGTCGAGCCCAAGGACTGGAACGCACTGATCAGCGATCCGGAAGTGCTGCTGATCGACACCC GTAACGATTACGAGGTCTCGATCGGCACCTTCGAAGGCGCCATCGATCCGAAAACCACCAGTTTTCGCGAATTCCCCGAC TACATCAAAGAACACTTCGATCCGGCCGTGCACAAGAAGGTCGCGATGTTCTGCACCGGCGGCATTCGCTGCGAGAAGGC CTCGAGCTACATGCTCGGCGAAGGCTTCGAAGAGGTCTATCACCTCAAGGGCGGCATTCTGAAGTACCTCGAAGAAGTGC CGCAGGAAGAAACCAAATGGCAGGGCGACTGCTTCGTCTTCGACAACCGCGTGACCGTGCGGCATGACCTGAGCGAAGGC GACTACGATCAATGTCATGCCTGCCGTACCCCGGTCAGCGTTGAAGATCGCGCCTCCGAGCATTACGTGGCCGGCATCAG CTGCCCGCATTGCTGGGACACCCTGAGCGAGAAGACCCGCCGCAGCGCCATCGACCGTCAGAAGCAGATCGAACTGGCAA AAGCGCGCAACATGCCGCACCCGATCGGCTACAACTATAAGCAAGCATCCACCGAGGCTTAA
Upstream 100 bases:
>100_bases TGAGGTTTTTTGCTAGAATCCGCAACGCGCCGCTCACCCGGCGCGTTTTTTTTCGCATCCGGTTCACCCTTTACGAGGGT AGCCACCTGGAGAAATACCC
Downstream 100 bases:
>100_bases TCATGTCTGCACGCCTGCTCTATGTGATGGATCCGATGTGTTCGTGGTGCTGGGGATTTGCCCCGGTGGCCAAGGCATTG GTGGAGCAGGCGCAGGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MTQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGLLAWLRNDPRMVDIDHKESYC DEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWNALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPD YIKEHFDPAVHKKVAMFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPHPIGYNYKQASTEA
Sequences:
>Translated_313_residues MTQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGLLAWLRNDPRMVDIDHKESYC DEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWNALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPD YIKEHFDPAVHKKVAMFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPHPIGYNYKQASTEA >Mature_312_residues TQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGLLAWLRNDPRMVDIDHKESYCD EQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWNALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPDY IKEHFDPAVHKKVAMFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEGD YDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPHPIGYNYKQASTEA
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain
Homologues:
Organism=Homo sapiens, GI111038120, Length=240, Percent_Identity=34.1666666666667, Blast_Score=124, Evalue=8e-29, Organism=Escherichia coli, GI1787294, Length=279, Percent_Identity=31.1827956989247, Blast_Score=141, Evalue=6e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4090_PSEPF (Q3K8S7)
Other databases:
- EMBL: CP000094 - RefSeq: YP_349818.1 - ProteinModelPortal: Q3K8S7 - STRING: Q3K8S7 - GeneID: 3712335 - GenomeReviews: CP000094_GR - KEGG: pfo:Pfl01_4090 - eggNOG: COG1054 - HOGENOM: HBG366219 - OMA: ARNDYEY - ProtClustDB: PRK00142 - BioCyc: PFLU205922:PFL_4090-MONOMER - HAMAP: MF_00469 - InterPro: IPR001763 - InterPro: IPR020936 - Gene3D: G3DSA:3.40.250.10 - SMART: SM00450
Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like
EC number: NA
Molecular weight: Translated: 35492; Mature: 35361
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS50206 RHODANESE_3
Important sites: ACT_SITE 178-178
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHH LAWLRNDPRMVDIDHKESYCDEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWN HHHHCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCC ALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPDYIKEHFDPAVHKKVAMFCTG CEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCC GIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG CEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCC DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPH CHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PIGYNYKQASTEA CCCCCCCCCCCCC >Mature Secondary Structure TQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHH LAWLRNDPRMVDIDHKESYCDEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWN HHHHCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCC ALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPDYIKEHFDPAVHKKVAMFCTG CEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCC GIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG CEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCC DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPH CHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PIGYNYKQASTEA CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA