Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is yceA [C]

Identifier: 77460311

GI number: 77460311

Start: 4627027

End: 4627968

Strand: Reverse

Name: yceA [C]

Synonym: Pfl01_4090

Alternate gene names: 77460311

Gene position: 4627968-4627027 (Counterclockwise)

Preceding gene: 77460312

Following gene: 77460310

Centisome position: 71.88

GC content: 58.49

Gene sequence:

>942_bases
ATGACACAACCGATTGTCGTGGCGGCACTGTACAAGTTCGTCACCCTCGAAGATTACGTCAACCTGCGCGAGCCCCTGCT
GCAAGCGATGGTCGACAACGGCATCAAAGGCACCCTGCTGATCGCCGAAGAAGGCATCAACGGCACGGTTTCCGGCAGCC
GTGAAGGCATCGACGGCCTGCTGGCCTGGCTGCGCAACGATCCGCGCATGGTCGATATCGATCACAAGGAATCGTACTGC
GACGAGCAGCCGTTCTATCGCACCAAGGTCAAGCTCAAGAAAGAGATCGTGACCCTGGGCGTTGAAGGCGTCGACCCGAA
CAAGAAAGTCGGCACCTACGTCGAGCCCAAGGACTGGAACGCACTGATCAGCGATCCGGAAGTGCTGCTGATCGACACCC
GTAACGATTACGAGGTCTCGATCGGCACCTTCGAAGGCGCCATCGATCCGAAAACCACCAGTTTTCGCGAATTCCCCGAC
TACATCAAAGAACACTTCGATCCGGCCGTGCACAAGAAGGTCGCGATGTTCTGCACCGGCGGCATTCGCTGCGAGAAGGC
CTCGAGCTACATGCTCGGCGAAGGCTTCGAAGAGGTCTATCACCTCAAGGGCGGCATTCTGAAGTACCTCGAAGAAGTGC
CGCAGGAAGAAACCAAATGGCAGGGCGACTGCTTCGTCTTCGACAACCGCGTGACCGTGCGGCATGACCTGAGCGAAGGC
GACTACGATCAATGTCATGCCTGCCGTACCCCGGTCAGCGTTGAAGATCGCGCCTCCGAGCATTACGTGGCCGGCATCAG
CTGCCCGCATTGCTGGGACACCCTGAGCGAGAAGACCCGCCGCAGCGCCATCGACCGTCAGAAGCAGATCGAACTGGCAA
AAGCGCGCAACATGCCGCACCCGATCGGCTACAACTATAAGCAAGCATCCACCGAGGCTTAA

Upstream 100 bases:

>100_bases
TGAGGTTTTTTGCTAGAATCCGCAACGCGCCGCTCACCCGGCGCGTTTTTTTTCGCATCCGGTTCACCCTTTACGAGGGT
AGCCACCTGGAGAAATACCC

Downstream 100 bases:

>100_bases
TCATGTCTGCACGCCTGCTCTATGTGATGGATCCGATGTGTTCGTGGTGCTGGGGATTTGCCCCGGTGGCCAAGGCATTG
GTGGAGCAGGCGCAGGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MTQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGLLAWLRNDPRMVDIDHKESYC
DEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWNALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPD
YIKEHFDPAVHKKVAMFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG
DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPHPIGYNYKQASTEA

Sequences:

>Translated_313_residues
MTQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGLLAWLRNDPRMVDIDHKESYC
DEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWNALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPD
YIKEHFDPAVHKKVAMFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG
DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPHPIGYNYKQASTEA
>Mature_312_residues
TQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGLLAWLRNDPRMVDIDHKESYCD
EQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWNALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPDY
IKEHFDPAVHKKVAMFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEGD
YDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPHPIGYNYKQASTEA

Specific function: Unknown. [C]

COG id: COG1054

COG function: function code R; Predicted sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Homo sapiens, GI111038120, Length=240, Percent_Identity=34.1666666666667, Blast_Score=124, Evalue=8e-29,
Organism=Escherichia coli, GI1787294, Length=279, Percent_Identity=31.1827956989247, Blast_Score=141, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4090_PSEPF (Q3K8S7)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_349818.1
- ProteinModelPortal:   Q3K8S7
- STRING:   Q3K8S7
- GeneID:   3712335
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_4090
- eggNOG:   COG1054
- HOGENOM:   HBG366219
- OMA:   ARNDYEY
- ProtClustDB:   PRK00142
- BioCyc:   PFLU205922:PFL_4090-MONOMER
- HAMAP:   MF_00469
- InterPro:   IPR001763
- InterPro:   IPR020936
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450

Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 35492; Mature: 35361

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50206 RHODANESE_3

Important sites: ACT_SITE 178-178

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHH
LAWLRNDPRMVDIDHKESYCDEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWN
HHHHCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCC
ALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPDYIKEHFDPAVHKKVAMFCTG
CEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCC
GIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG
CEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCC
DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPH
CHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PIGYNYKQASTEA
CCCCCCCCCCCCC
>Mature Secondary Structure 
TQPIVVAALYKFVTLEDYVNLREPLLQAMVDNGIKGTLLIAEEGINGTVSGSREGIDGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHH
LAWLRNDPRMVDIDHKESYCDEQPFYRTKVKLKKEIVTLGVEGVDPNKKVGTYVEPKDWN
HHHHCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCC
ALISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPDYIKEHFDPAVHKKVAMFCTG
CEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCC
GIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPQEETKWQGDCFVFDNRVTVRHDLSEG
CEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCC
DYDQCHACRTPVSVEDRASEHYVAGISCPHCWDTLSEKTRRSAIDRQKQIELAKARNMPH
CHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PIGYNYKQASTEA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA