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The map label for this gene is ykuI [H]

Identifier: 77460193

GI number: 77460193

Start: 4496043

End: 4497206

Strand: Direct

Name: ykuI [H]

Synonym: Pfl01_3972

Alternate gene names: 77460193

Gene position: 4496043-4497206 (Clockwise)

Preceding gene: 77460192

Following gene: 77460194

Centisome position: 69.83

GC content: 63.06

Gene sequence:

>1164_bases
GTGATCGACGGGCAACCGCTCGCCTGCTTTCAACCGTTCATCGATACCGCCACCGGACGCATTGCAGGGGTCGAGGCACT
GGGTCGACTGCGCCAGGCCGATGGCCAACTGGCGTCGGTCGGACCGCTGTTCGCCGACCCGCGCACGCCTGCCATCGCAC
TGCGCCGAATGGACCGGCAAATCCGCGACAACGCGCTGAGCCGACTGCACGAAGCGCCGCCGGACTGGTTTCTCAGCCTG
AACATGTCACCGCGCTGGATCAGTCGCTTGCGGGCCGACCAGGCACTGCCGAGCCTGAAACAGCTCGCCCGGCATGGTAT
CGACCCGCAACGGATTGTTTTCGAGATCACCGAACTCGGCGGTAACAGTCAGCGCCTGAGCGAAGTCGTGGCACGCTATC
GCGATGCCGGCGCCCGGATCGCCATCGACGATTTTGGCGCCGGTTATTCGCAGCTCGATCGAGTGCTGGCGCTGCAACCG
GACATTCTCAAACTCGACATGCGCCTGTTCCAGGCTGCGGCACTTGGCGGGCCGAGCAGTGATGTGGTCAAGGCCCTCGC
GCAAATGGCCGAAAAAACCGGCTGCTGGATCATTGCCGAAGGCGTGGAAACTGCGGCGCAACTCAATTTCGCTCTGGAGT
GCGGTTCGCGTTACGTGCAGGGTTTTCTGTTCGCCCGGGCGCAGGAGGCGTTTTTCGGTGCGGATGACTTCGTCGAGTGC
TTTGCCGAGCTGCGCCAGTCTTACGTGCGCCAGAAACTGGCCGAACGCAGCAAGCTGATGTTCATGCGCCAGCAACTCAG
CGAACTCATGACCATCCTGCAAACCTGGGCCCAGGCCCGCGCCCCGCTCAGTGCCCTGCCGCAACTCGACGCCTTTCCCT
GGCTGCTGCGCTTTTATCAGTGCGACCGTCACGGCACCCAACTGACGCCGAATCTGGAATGGCGACAAAGCGGCTGGGTA
GCCGACAACCGCTACCTGGGCCACAACTGGTCGTGGCGCCCTTACTTCTATCACCTGCTGGCCGAGGGCTGGGAGGAACG
GCGCCTGACCCTTTCCAACACCTATCGCGATGCCACCAGCAACCAGTATTGCCTGACTGCCGGGCAGTTCTTCGATAACG
GCGAGCGCCTGCTGCTGATCGACATCGATGCCGCGGGGCTGTAG

Upstream 100 bases:

>100_bases
TGCAATACCGGCGGGATTGAATCTCTTATCCGGAGGTTCAATCCCGCTTGCCTATCCGGCCGGCAGAATTCAACCAGAAC
AAGAACGACAAGGAGGCCCC

Downstream 100 bases:

>100_bases
TTGCGCTTGCAGATGCCAGCCTGAACCGGGAAGCTAGGGAATCAGTCACCAGACGGAGAGAATCAGCCTTGGATTGGCAT
ACCCTGCTCAACCGCGAACG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MIDGQPLACFQPFIDTATGRIAGVEALGRLRQADGQLASVGPLFADPRTPAIALRRMDRQIRDNALSRLHEAPPDWFLSL
NMSPRWISRLRADQALPSLKQLARHGIDPQRIVFEITELGGNSQRLSEVVARYRDAGARIAIDDFGAGYSQLDRVLALQP
DILKLDMRLFQAAALGGPSSDVVKALAQMAEKTGCWIIAEGVETAAQLNFALECGSRYVQGFLFARAQEAFFGADDFVEC
FAELRQSYVRQKLAERSKLMFMRQQLSELMTILQTWAQARAPLSALPQLDAFPWLLRFYQCDRHGTQLTPNLEWRQSGWV
ADNRYLGHNWSWRPYFYHLLAEGWEERRLTLSNTYRDATSNQYCLTAGQFFDNGERLLLIDIDAAGL

Sequences:

>Translated_387_residues
MIDGQPLACFQPFIDTATGRIAGVEALGRLRQADGQLASVGPLFADPRTPAIALRRMDRQIRDNALSRLHEAPPDWFLSL
NMSPRWISRLRADQALPSLKQLARHGIDPQRIVFEITELGGNSQRLSEVVARYRDAGARIAIDDFGAGYSQLDRVLALQP
DILKLDMRLFQAAALGGPSSDVVKALAQMAEKTGCWIIAEGVETAAQLNFALECGSRYVQGFLFARAQEAFFGADDFVEC
FAELRQSYVRQKLAERSKLMFMRQQLSELMTILQTWAQARAPLSALPQLDAFPWLLRFYQCDRHGTQLTPNLEWRQSGWV
ADNRYLGHNWSWRPYFYHLLAEGWEERRLTLSNTYRDATSNQYCLTAGQFFDNGERLLLIDIDAAGL
>Mature_387_residues
MIDGQPLACFQPFIDTATGRIAGVEALGRLRQADGQLASVGPLFADPRTPAIALRRMDRQIRDNALSRLHEAPPDWFLSL
NMSPRWISRLRADQALPSLKQLARHGIDPQRIVFEITELGGNSQRLSEVVARYRDAGARIAIDDFGAGYSQLDRVLALQP
DILKLDMRLFQAAALGGPSSDVVKALAQMAEKTGCWIIAEGVETAAQLNFALECGSRYVQGFLFARAQEAFFGADDFVEC
FAELRQSYVRQKLAERSKLMFMRQQLSELMTILQTWAQARAPLSALPQLDAFPWLLRFYQCDRHGTQLTPNLEWRQSGWV
ADNRYLGHNWSWRPYFYHLLAEGWEERRLTLSNTYRDATSNQYCLTAGQFFDNGERLLLIDIDAAGL

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=232, Percent_Identity=30.1724137931034, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=28.5087719298246, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082096, Length=211, Percent_Identity=30.3317535545024, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI226510982, Length=254, Percent_Identity=29.1338582677165, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786507, Length=226, Percent_Identity=26.1061946902655, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787055, Length=234, Percent_Identity=26.0683760683761, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=28.6852589641434, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081921, Length=227, Percent_Identity=27.7533039647577, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=26.8085106382979, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788849, Length=153, Percent_Identity=26.797385620915, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=157, Percent_Identity=31.8471337579618, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081980, Length=221, Percent_Identity=24.8868778280543, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787410, Length=233, Percent_Identity=25.3218884120172, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633
- InterPro:   IPR018842 [H]

Pfam domain/function: PF00563 EAL; PF10388 YkuI_C [H]

EC number: NA

Molecular weight: Translated: 43763; Mature: 43763

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDGQPLACFQPFIDTATGRIAGVEALGRLRQADGQLASVGPLFADPRTPAIALRRMDRQ
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHH
IRDNALSRLHEAPPDWFLSLNMSPRWISRLRADQALPSLKQLARHGIDPQRIVFEITELG
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCC
GNSQRLSEVVARYRDAGARIAIDDFGAGYSQLDRVLALQPDILKLDMRLFQAAALGGPSS
CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
DVVKALAQMAEKTGCWIIAEGVETAAQLNFALECGSRYVQGFLFARAQEAFFGADDFVEC
HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FAELRQSYVRQKLAERSKLMFMRQQLSELMTILQTWAQARAPLSALPQLDAFPWLLRFYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
CDRHGTQLTPNLEWRQSGWVADNRYLGHNWSWRPYFYHLLAEGWEERRLTLSNTYRDATS
HCCCCCCCCCCCCHHCCCCCCCCCEECCCCCCHHHHHHHHHCCHHHCCEEHHHHHCCCCC
NQYCLTAGQFFDNGERLLLIDIDAAGL
CCEEEEECCHHCCCCEEEEEECCCCCC
>Mature Secondary Structure
MIDGQPLACFQPFIDTATGRIAGVEALGRLRQADGQLASVGPLFADPRTPAIALRRMDRQ
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHH
IRDNALSRLHEAPPDWFLSLNMSPRWISRLRADQALPSLKQLARHGIDPQRIVFEITELG
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCC
GNSQRLSEVVARYRDAGARIAIDDFGAGYSQLDRVLALQPDILKLDMRLFQAAALGGPSS
CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
DVVKALAQMAEKTGCWIIAEGVETAAQLNFALECGSRYVQGFLFARAQEAFFGADDFVEC
HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FAELRQSYVRQKLAERSKLMFMRQQLSELMTILQTWAQARAPLSALPQLDAFPWLLRFYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
CDRHGTQLTPNLEWRQSGWVADNRYLGHNWSWRPYFYHLLAEGWEERRLTLSNTYRDATS
HCCCCCCCCCCCCHHCCCCCCCCCEECCCCCCHHHHHHHHHCCHHHCCEEHHHHHCCCCC
NQYCLTAGQFFDNGERLLLIDIDAAGL
CCEEEEECCHHCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]