| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is kefB [H]
Identifier: 77460188
GI number: 77460188
Start: 4491644
End: 4493356
Strand: Direct
Name: kefB [H]
Synonym: Pfl01_3967
Alternate gene names: 77460188
Gene position: 4491644-4493356 (Clockwise)
Preceding gene: 77460184
Following gene: 77460190
Centisome position: 69.76
GC content: 63.05
Gene sequence:
>1713_bases GTGTTTGCCAATCTGCTGATCATTCTGGCGTCGTCCCTGGTGATGATTGCCCTGTTCCGACGCCTGCGCCTGCCGCCTGT GCTGGGTTACCTGTGCGTGGGCTTGATGGTCGGGCCGAAGGCATTCGACTGGATCAATGAAAGCGAACATCTGCCGGATC TTGCCGAACTGGGCGTGGTGTTTCTGCTGTTTTCCCTGGGGCTGGAGTTCTCCCTGTCGAAAATGATTGCCCTGCGCCAG GTGGTTTTCCGTCTGGGCAGCCAGCAAGTGATGATCACCACACTCCTGCTGGGAGGCGTGCTTATGTTGCTGGGCATGCC CGCCACACCAGCCTTGCTGCTGGGCGCCGGCCTCTCGCTATCATCCACGGCGATTGTGACCAAGGAGCTGGGCAGTCTCG GCGAAATCTTCAGCAGCCACGGCCAGAACGCGGTAGGCGTCCTGTTGTTCCAGGACGTGGTGGCCGTGTTGCTGTTGACG CTGGTGCCGGTATTTGCCGGGAGCAGTGATCAGGCCTGGTACTGGGCGCTGCCCCTGACCTTGTTGAAGACCGTATTGCT GTTCTTCGGTTTGTTGCTGGCCAGCCGCTGGCTGCTGCCCCGCCTGTTCCAGGAAGTCGCGGCGTCGCGCTCGGCGGAGC TGTTCGTGCTGCTGGCCCTGGTGATTGTGTTGCTGACGGCCTGGCTGACCCACCTGCTGGGCCTGTCTCCGGCCCTCGGC GCGTTCCTCGCGGGCATGCTGCTGGGCGAGAGCCATTACCGGCATCAGATCGAGGCCGATATCCGGCCGTTTCGCGACAT TCTGCTGGGACTGTTTTTCGTCAGCATCGGCATGCTGATCGACCTGCAGCTGTTCGCCAGCCACAGCCTGCTGATTATCG GCATGACTCTGGGATTGCTGGTTATCAAAGGTCTGGTGGTGGCGCTGTTGGTGAAATGGCGCGGCAGCGACAGTGAAACG GCCTGGCGCAGCGGCCTCGCCCTCGCCCAGGGCGGTGAGTTCTGCTTCGCCCTGATGGCGCAGATGCAGCAGACCCGGCT GCTCCCAGCCGAACTCGGTGCTCTGCTGCTCGCCGCCACCTTCTGCTCGATGCTGCTGACGCCCCTGCTGTTACGCGCCG CTCCGCGCATCGCCGCCGCCCTGCACCGCAAACCCAATCAGGAAGCACAGATCGAGGAAATCAGTGCCCTCAATGCCGGG TTCGACGGGCATGTGGTGATCTGTGGTTACGGCCGCGTCGGCCAGTCGATCGGACGCTTCATGCGCAATGCCGGGCAATC CTACGTCGCGCTGGACAACGATCCGGTGCGAATTCAGGAAGCCGCCACCGCCGAGCGCGACGTCCACTACGGCGATTCAA CCCGCGGCGATCTGCTGACCGCCGTCGGTTTGCTGCGCGCCAGGTTGCTGGTGATTGCTGTGGATCAAGCCGACGTGGCC CTGCGTGTTCTCAAGGAGGCTCGACGTCTCAACCCGACAGTGCCGATCCTGGTGCGCACCCGGGACGACAGCCAGTCGGC CGAGCTGAAAGCAGCCGGCGCCAGCGAAGTGGTGCCGGAACTGCTGGAGTCGAGCCTGATGCTCGGTTCCCATGCCCTGA TCCTGCTGGGGTTTCCCGCGCACCGGGTGCAGGAGAAAGTCGATCAGGTGCGCATCGATCGTTATCGCCTGCTTCACGGC TTTTACCCCGGAGCCGACGATGAGGAAACCTAG
Upstream 100 bases:
>100_bases AAACCCTGATGTAAATCAGCCCACAAAATCGCCATTTACGCGATGCTCCGGTGTTTTTTACCTCTACGCTTGAAGAGCCT GACCTGTCCCGGAGTGTCTC
Downstream 100 bases:
>100_bases TCCTGGCTCACCGCGCCGATCTTGTGCAGCGACAGGTCGGCGCCGTAGTACTCCTGTTCCTGGCTCAGGCGCAGACCATG CAGCGCCTTGATCGAACCGT
Product: Sodium/hydrogen exchanger
Products: Proton [Cytoplasm]; K (I) [Periplasm] [C]
Alternate protein names: K(+)/H(+) antiporter; NEM-activatable K(+)/H(+) antiporter [H]
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MFANLLIILASSLVMIALFRRLRLPPVLGYLCVGLMVGPKAFDWINESEHLPDLAELGVVFLLFSLGLEFSLSKMIALRQ VVFRLGSQQVMITTLLLGGVLMLLGMPATPALLLGAGLSLSSTAIVTKELGSLGEIFSSHGQNAVGVLLFQDVVAVLLLT LVPVFAGSSDQAWYWALPLTLLKTVLLFFGLLLASRWLLPRLFQEVAASRSAELFVLLALVIVLLTAWLTHLLGLSPALG AFLAGMLLGESHYRHQIEADIRPFRDILLGLFFVSIGMLIDLQLFASHSLLIIGMTLGLLVIKGLVVALLVKWRGSDSET AWRSGLALAQGGEFCFALMAQMQQTRLLPAELGALLLAATFCSMLLTPLLLRAAPRIAAALHRKPNQEAQIEEISALNAG FDGHVVICGYGRVGQSIGRFMRNAGQSYVALDNDPVRIQEAATAERDVHYGDSTRGDLLTAVGLLRARLLVIAVDQADVA LRVLKEARRLNPTVPILVRTRDDSQSAELKAAGASEVVPELLESSLMLGSHALILLGFPAHRVQEKVDQVRIDRYRLLHG FYPGADDEET
Sequences:
>Translated_570_residues MFANLLIILASSLVMIALFRRLRLPPVLGYLCVGLMVGPKAFDWINESEHLPDLAELGVVFLLFSLGLEFSLSKMIALRQ VVFRLGSQQVMITTLLLGGVLMLLGMPATPALLLGAGLSLSSTAIVTKELGSLGEIFSSHGQNAVGVLLFQDVVAVLLLT LVPVFAGSSDQAWYWALPLTLLKTVLLFFGLLLASRWLLPRLFQEVAASRSAELFVLLALVIVLLTAWLTHLLGLSPALG AFLAGMLLGESHYRHQIEADIRPFRDILLGLFFVSIGMLIDLQLFASHSLLIIGMTLGLLVIKGLVVALLVKWRGSDSET AWRSGLALAQGGEFCFALMAQMQQTRLLPAELGALLLAATFCSMLLTPLLLRAAPRIAAALHRKPNQEAQIEEISALNAG FDGHVVICGYGRVGQSIGRFMRNAGQSYVALDNDPVRIQEAATAERDVHYGDSTRGDLLTAVGLLRARLLVIAVDQADVA LRVLKEARRLNPTVPILVRTRDDSQSAELKAAGASEVVPELLESSLMLGSHALILLGFPAHRVQEKVDQVRIDRYRLLHG FYPGADDEET >Mature_570_residues MFANLLIILASSLVMIALFRRLRLPPVLGYLCVGLMVGPKAFDWINESEHLPDLAELGVVFLLFSLGLEFSLSKMIALRQ VVFRLGSQQVMITTLLLGGVLMLLGMPATPALLLGAGLSLSSTAIVTKELGSLGEIFSSHGQNAVGVLLFQDVVAVLLLT LVPVFAGSSDQAWYWALPLTLLKTVLLFFGLLLASRWLLPRLFQEVAASRSAELFVLLALVIVLLTAWLTHLLGLSPALG AFLAGMLLGESHYRHQIEADIRPFRDILLGLFFVSIGMLIDLQLFASHSLLIIGMTLGLLVIKGLVVALLVKWRGSDSET AWRSGLALAQGGEFCFALMAQMQQTRLLPAELGALLLAATFCSMLLTPLLLRAAPRIAAALHRKPNQEAQIEEISALNAG FDGHVVICGYGRVGQSIGRFMRNAGQSYVALDNDPVRIQEAATAERDVHYGDSTRGDLLTAVGLLRARLLVIAVDQADVA LRVLKEARRLNPTVPILVRTRDDSQSAELKAAGASEVVPELLESSLMLGSHALILLGFPAHRVQEKVDQVRIDRYRLLHG FYPGADDEET
Specific function: Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport [H]
COG id: COG0475
COG function: function code P; Kef-type K+ transport systems, membrane components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI157388921, Length=380, Percent_Identity=28.9473684210526, Blast_Score=100, Evalue=6e-21, Organism=Escherichia coli, GI1786232, Length=547, Percent_Identity=34.7349177330896, Blast_Score=275, Evalue=6e-75, Organism=Escherichia coli, GI1789749, Length=562, Percent_Identity=34.8754448398576, Blast_Score=271, Evalue=6e-74, Organism=Escherichia coli, GI1786685, Length=523, Percent_Identity=31.3575525812619, Blast_Score=196, Evalue=4e-51, Organism=Saccharomyces cerevisiae, GI6322367, Length=352, Percent_Identity=22.7272727272727, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR020884 - InterPro: IPR004771 - InterPro: IPR016040 - InterPro: IPR003148 [H]
Pfam domain/function: PF00999 Na_H_Exchanger; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 61851; Mature: 61851
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFANLLIILASSLVMIALFRRLRLPPVLGYLCVGLMVGPKAFDWINESEHLPDLAELGVV CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHH FLLFSLGLEFSLSKMIALRQVVFRLGSQQVMITTLLLGGVLMLLGMPATPALLLGAGLSL HHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC SSTAIVTKELGSLGEIFSSHGQNAVGVLLFQDVVAVLLLTLVPVFAGSSDQAWYWALPLT CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH LLKTVLLFFGLLLASRWLLPRLFQEVAASRSAELFVLLALVIVLLTAWLTHLLGLSPALG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AFLAGMLLGESHYRHQIEADIRPFRDILLGLFFVSIGMLIDLQLFASHSLLIIGMTLGLL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VIKGLVVALLVKWRGSDSETAWRSGLALAQGGEFCFALMAQMQQTRLLPAELGALLLAAT HHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH FCSMLLTPLLLRAAPRIAAALHRKPNQEAQIEEISALNAGFDGHVVICGYGRVGQSIGRF HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHH MRNAGQSYVALDNDPVRIQEAATAERDVHYGDSTRGDLLTAVGLLRARLLVIAVDQADVA HHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEECHHHHH LRVLKEARRLNPTVPILVRTRDDSQSAELKAAGASEVVPELLESSLMLGSHALILLGFPA HHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCH HRVQEKVDQVRIDRYRLLHGFYPGADDEET HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MFANLLIILASSLVMIALFRRLRLPPVLGYLCVGLMVGPKAFDWINESEHLPDLAELGVV CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHH FLLFSLGLEFSLSKMIALRQVVFRLGSQQVMITTLLLGGVLMLLGMPATPALLLGAGLSL HHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC SSTAIVTKELGSLGEIFSSHGQNAVGVLLFQDVVAVLLLTLVPVFAGSSDQAWYWALPLT CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH LLKTVLLFFGLLLASRWLLPRLFQEVAASRSAELFVLLALVIVLLTAWLTHLLGLSPALG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AFLAGMLLGESHYRHQIEADIRPFRDILLGLFFVSIGMLIDLQLFASHSLLIIGMTLGLL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VIKGLVVALLVKWRGSDSETAWRSGLALAQGGEFCFALMAQMQQTRLLPAELGALLLAAT HHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH FCSMLLTPLLLRAAPRIAAALHRKPNQEAQIEEISALNAGFDGHVVICGYGRVGQSIGRF HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHH MRNAGQSYVALDNDPVRIQEAATAERDVHYGDSTRGDLLTAVGLLRARLLVIAVDQADVA HHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEECHHHHH LRVLKEARRLNPTVPILVRTRDDSQSAELKAAGASEVVPELLESSLMLGSHALILLGFPA HHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCH HRVQEKVDQVRIDRYRLLHGFYPGADDEET HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; K (I) [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + K (I) [Cytoplasm] = Proton [Cytoplasm] + K (I) [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA