| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77460115
Identifier: 77460115
GI number: 77460115
Start: 4405076
End: 4405480
Strand: Direct
Name: 77460115
Synonym: Pfl01_3894
Alternate gene names: NA
Gene position: 4405076-4405480 (Clockwise)
Preceding gene: 77460114
Following gene: 77460119
Centisome position: 68.42
GC content: 57.04
Gene sequence:
>405_bases ATGTCCCCACGCCTGCTTCTGGCCCTGACGCCTTTTCTTTTCACTTCCGTTGCTCACGCTGCCGTGGACTGCGCTAATGC CAGCGATCAGGCCACCATGAACCAGTGCGCCGCGCAGGAAAACAAGGCGGCGGACAAGGAGTTGAATACGGTTTATCAGC AGATTACCGCTCGGTTGAAGGACAACCCTGATGGCAAGAAACTGCTGGTGAGCGCGCAACGGGCGTGGATCGGCTTTCGC GATACCGAGTGCAAGTTTTCGGCATCCGGGGTGGCAGGCGGGAGTGTTTATCCGTTGATCTACAACAATTGCATCACCTC AGTGACAAAGACGCGAACCGAGGCGCTCAAGCAGTATTTGAAGTGTGAGGAAGGTGACATGAGCTGCCCGGTGCCCGGAG CCTGA
Upstream 100 bases:
>100_bases GCCGAACGGTTGCTCAACGCATCCAGACATCGCACACCTTCTTAGCGCCATGAAGTCGCTAAACTGCCCGGCACGTTCAT TCATCAAAGCGAGATGACTC
Downstream 100 bases:
>100_bases TCTTCCAGAGTTATTGAAGGCCTCATCGCTGGCAAGCCAGCTCCCACAGTTTTTGTGTCGATCACAAAAAACTGCAACTG CACAAACCCCTGTGGGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MSPRLLLALTPFLFTSVAHAAVDCANASDQATMNQCAAQENKAADKELNTVYQQITARLKDNPDGKKLLVSAQRAWIGFR DTECKFSASGVAGGSVYPLIYNNCITSVTKTRTEALKQYLKCEEGDMSCPVPGA
Sequences:
>Translated_134_residues MSPRLLLALTPFLFTSVAHAAVDCANASDQATMNQCAAQENKAADKELNTVYQQITARLKDNPDGKKLLVSAQRAWIGFR DTECKFSASGVAGGSVYPLIYNNCITSVTKTRTEALKQYLKCEEGDMSCPVPGA >Mature_133_residues SPRLLLALTPFLFTSVAHAAVDCANASDQATMNQCAAQENKAADKELNTVYQQITARLKDNPDGKKLLVSAQRAWIGFRD TECKFSASGVAGGSVYPLIYNNCITSVTKTRTEALKQYLKCEEGDMSCPVPGA
Specific function: Unknown
COG id: COG3755
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To E.coli yecT [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009739 [H]
Pfam domain/function: PF07007 DUF1311 [H]
EC number: NA
Molecular weight: Translated: 14466; Mature: 14334
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPRLLLALTPFLFTSVAHAAVDCANASDQATMNQCAAQENKAADKELNTVYQQITARLK CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DNPDGKKLLVSAQRAWIGFRDTECKFSASGVAGGSVYPLIYNNCITSVTKTRTEALKQYL CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KCEEGDMSCPVPGA CCCCCCCCCCCCCC >Mature Secondary Structure SPRLLLALTPFLFTSVAHAAVDCANASDQATMNQCAAQENKAADKELNTVYQQITARLK CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DNPDGKKLLVSAQRAWIGFRDTECKFSASGVAGGSVYPLIYNNCITSVTKTRTEALKQYL CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KCEEGDMSCPVPGA CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8121412; 11481430 [H]