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The map label for this gene is dapF1 [H]

Identifier: 77460003

GI number: 77460003

Start: 4277276

End: 4278268

Strand: Reverse

Name: dapF1 [H]

Synonym: Pfl01_3781

Alternate gene names: 77460003

Gene position: 4278268-4277276 (Counterclockwise)

Preceding gene: 77460006

Following gene: 77459996

Centisome position: 66.45

GC content: 66.77

Gene sequence:

>993_bases
ATGACGCAGTTCTACGATGCACGGGGCAATATCTACGGGGTCGTTTCGCCGCGAGTGCTACGCGATGCCGGTATCGATTT
ACCGACCAGCGCGGCGCAGTGCGCGTCGTCGCGCCAGACGTGGAGTACCGCAGCCATCGCGCAGTGTTGCGATTGGCCCG
ACGGTCAACGTCCCGTCGGCAGCAAATCCCATCGCAGCGATGGCCTGTTGATCGGCCCGTTTCAATCCGCGCCCCCCTTC
GACCTGCTGATCGTCAACACCGACGGCACGCTGGCCGAGCGCAGCGGCAACGGCCTGACGATTTTCTCCCGGGCGCTGCT
TGAACAAGGGTTGATGCCGGAGGAGGGGGCGACGCTGCGGGTGCATCACGACAAACAGGACTCGCAATCGCCAGTGCCGA
CCTCGGTGAAACCGGCGCAAGTAGCGGGCGTGCACGGCTTTTGGCTGGACCTCGGCCAGCCCGGTTTCGGCCCGGTGGCC
GTCGGTGCGCTCGGGGTTGAACCGGTGCCGTTCAACGGTGTGGAGGTCAACCGTGTTCGGCCGTTGGCGCAACTCGATCC
CGCCTGGGCGCACAGCCAGTTCGTGCGGATCGGTAATCCACATTGCGTGACGCTGGTGCAGGATGAAGTCGCACTGCCGA
GCAACGCGCAGATGCTTGAACCGCCGCTGGCGGACAGTCTGACCGCTATCGCCTATGCCATGCCCACCGGCGCCGGCCAG
CCGTGCCCGGCCGGGGTCAACCTGCAATGGGCGACGCGCGCCGGGGATCAGCGCATTGTGGCGCGGGTGTTCGAACGGGG
CGAGGGGCCGACGGCGTCTTCGGGCACCAGCGCCAGCGCGGTGGCCAGCGCTGCGTGGCGAGTGGGTTGGGTGTCGGCGG
GAGAGGTGCAAGTGCTGATGCCGGGCGGTACGGCGCCGATTTTACTGGAAGAGCGCGATGGCGAGCTGCTCGGCGTGCGT
CTGTTCGGCACCGCGCATCGGACAAAAAGGTGA

Upstream 100 bases:

>100_bases
TCCTTGCACAGCTCTTTCGATGGAGCGAGCCCGCTCGCGTCGGCAGGGCGTTGCGATTTACAGTGGCGTCCCTGTCGACG
GGAAAAACAAGGGCGGGTTC

Downstream 100 bases:

>100_bases
AGTCCCTTTCATGATCGTCCCCCCGGGAACGATGGATCCCTTGGGGCTTACTGTGGGCCTGCGCGCAGCGCTTGTCGCCT
GTCAGATCTGACAGGTCGAC

Product: diaminopimelate epimerase-like

Products: NA

Alternate protein names: DAP epimerase 1 [H]

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTQFYDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRPVGSKSHRSDGLLIGPFQSAPPF
DLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLRVHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVA
VGALGVEPVPFNGVEVNRVRPLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQ
PCPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLMPGGTAPILLEERDGELLGVR
LFGTAHRTKR

Sequences:

>Translated_330_residues
MTQFYDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRPVGSKSHRSDGLLIGPFQSAPPF
DLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLRVHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVA
VGALGVEPVPFNGVEVNRVRPLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQ
PCPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLMPGGTAPILLEERDGELLGVR
LFGTAHRTKR
>Mature_329_residues
TQFYDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRPVGSKSHRSDGLLIGPFQSAPPFD
LLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLRVHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAV
GALGVEPVPFNGVEVNRVRPLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQP
CPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLMPGGTAPILLEERDGELLGVRL
FGTAHRTKR

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 34805; Mature: 34673

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQFYDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRPVG
CCEEECCCCCEEEEECCHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
SKSHRSDGLLIGPFQSAPPFDLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLR
CCCCCCCCEEEECCCCCCCEEEEEECCCCCEEECCCCCEEHHHHHHHHHCCCCCCCCEEE
VHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAVGALGVEPVPFNGVEVNRVR
EECCCCCCCCCCCCCCCCHHEECCEEEEEECCCCCCCCEEEHEECCCCCCCCCEEHHHCC
PLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQ
CHHHCCCCHHCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHEEECCCCCCC
PCPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLM
CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEEEECCCCEEEEE
PGGTAPILLEERDGELLGVRLFGTAHRTKR
CCCCCEEEEECCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
TQFYDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRPVG
CEEECCCCCEEEEECCHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
SKSHRSDGLLIGPFQSAPPFDLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLR
CCCCCCCCEEEECCCCCCCEEEEEECCCCCEEECCCCCEEHHHHHHHHHCCCCCCCCEEE
VHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAVGALGVEPVPFNGVEVNRVR
EECCCCCCCCCCCCCCCCHHEECCEEEEEECCCCCCCCEEEHEECCCCCCCCCEEHHHCC
PLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQ
CHHHCCCCHHCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHEEECCCCCCC
PCPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLM
CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEEEECCCCEEEEE
PGGTAPILLEERDGELLGVRLFGTAHRTKR
CCCCCEEEEECCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139910; 11759840 [H]