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The map label for this gene is yeaM [H]

Identifier: 77459983

GI number: 77459983

Start: 4258723

End: 4259511

Strand: Reverse

Name: yeaM [H]

Synonym: Pfl01_3761

Alternate gene names: 77459983

Gene position: 4259511-4258723 (Counterclockwise)

Preceding gene: 77459986

Following gene: 77459982

Centisome position: 66.16

GC content: 66.54

Gene sequence:

>789_bases
ATGTTCGCCATGGCCCTCGCTGCGCCCCCTGATCTGACTGATACCGATGTGCCCGTGCAGCCGCTGGCGCGCACCTATCC
GCGTGGGTTGTTTATCGAGCCGCACGAGCATGTGTGGGGGCAGTTGCTGTATGCGATGAGCGGGGTGATGTGGGTCGAGA
CGCCGCACGAGGCGCTGGTGGTGCCGCCGCAGCGGGCGGTGTGGTTGCCGCCGGGGGTTCCGCACGGGATTCGGGTGGTG
TCGGATTTGCAGATGCGCAATATCTACCTGCGCCCGGCGCTGGCGGCGACGCTGGATGAGACGGTGCAGGTGATCGAGGT
CGGCGGGCTGCTGCGCGAGTTGATTGTCGGTCTGGTGGCGCAGGGCGACAGCGGTGATGCCGAGTATTACGAGGCGCTGG
TCGGGCTGGCGCTGCTGGAGCTGAAACGTGCAAGGCGTTCACAGCTGAAGATCCCGTTGCCGGATGATGCCGACCGGCGG
TTGATGAGTCTGTGTCAGGCGGTGATGGCCGCGCCTTCGCTGGACGTTCCCTTTGAGCAGCACGCCGAAAACGCCGGGGC
CAGCGTGCGCACCCTGGCGCGGTTGTTCAAGGAGGGGCTGGGCATGGGCTTCGCCGAGTGGCGGCGTCAGGTGCAACTGG
CGACGGCGGTGGCGGAGTTGATCCAGGGCGTGCCGGTCAGCGCGATTGCCCGTGAGCTGGGTTATTCGCCGAGCAGTTTC
AGCGACATGTTCCGCCGCGAGCTGGGTGTCGCCCCTTCGCAATTCGATGGCGGGCCGCTTGCCGGTTGA

Upstream 100 bases:

>100_bases
CTGGGCTGCGGGAAAATTCACTCGGATTGTCAGACGGTATCTATCAATGGCGAGGTTCCGGTCGGACTGGTTACCATGGC
GCTTTCGCCCACCCCGATGA

Downstream 100 bases:

>100_bases
TTTGGCAGAAATTCAGAAGTCCTTGGCCGATGCCGGTCGCCGCCTTTCCCTAGACTTTGCCCATTCCCTTTGTGTGGCGG
AGTGATCCCATGAATTACCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFAMALAAPPDLTDTDVPVQPLARTYPRGLFIEPHEHVWGQLLYAMSGVMWVETPHEALVVPPQRAVWLPPGVPHGIRVV
SDLQMRNIYLRPALAATLDETVQVIEVGGLLRELIVGLVAQGDSGDAEYYEALVGLALLELKRARRSQLKIPLPDDADRR
LMSLCQAVMAAPSLDVPFEQHAENAGASVRTLARLFKEGLGMGFAEWRRQVQLATAVAELIQGVPVSAIARELGYSPSSF
SDMFRRELGVAPSQFDGGPLAG

Sequences:

>Translated_262_residues
MFAMALAAPPDLTDTDVPVQPLARTYPRGLFIEPHEHVWGQLLYAMSGVMWVETPHEALVVPPQRAVWLPPGVPHGIRVV
SDLQMRNIYLRPALAATLDETVQVIEVGGLLRELIVGLVAQGDSGDAEYYEALVGLALLELKRARRSQLKIPLPDDADRR
LMSLCQAVMAAPSLDVPFEQHAENAGASVRTLARLFKEGLGMGFAEWRRQVQLATAVAELIQGVPVSAIARELGYSPSSF
SDMFRRELGVAPSQFDGGPLAG
>Mature_262_residues
MFAMALAAPPDLTDTDVPVQPLARTYPRGLFIEPHEHVWGQLLYAMSGVMWVETPHEALVVPPQRAVWLPPGVPHGIRVV
SDLQMRNIYLRPALAATLDETVQVIEVGGLLRELIVGLVAQGDSGDAEYYEALVGLALLELKRARRSQLKIPLPDDADRR
LMSLCQAVMAAPSLDVPFEQHAENAGASVRTLARLFKEGLGMGFAEWRRQVQLATAVAELIQGVPVSAIARELGYSPSSF
SDMFRRELGVAPSQFDGGPLAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=31.390134529148, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28510; Mature: 28510

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAMALAAPPDLTDTDVPVQPLARTYPRGLFIEPHEHVWGQLLYAMSGVMWVETPHEALV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCEEEECCCCEEE
VPPQRAVWLPPGVPHGIRVVSDLQMRNIYLRPALAATLDETVQVIEVGGLLRELIVGLVA
ECCCCCEECCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGDSGDAEYYEALVGLALLELKRARRSQLKIPLPDDADRRLMSLCQAVMAAPSLDVPFEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
HAENAGASVRTLARLFKEGLGMGFAEWRRQVQLATAVAELIQGVPVSAIARELGYSPSSF
HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
SDMFRRELGVAPSQFDGGPLAG
HHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MFAMALAAPPDLTDTDVPVQPLARTYPRGLFIEPHEHVWGQLLYAMSGVMWVETPHEALV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCEEEECCCCEEE
VPPQRAVWLPPGVPHGIRVVSDLQMRNIYLRPALAATLDETVQVIEVGGLLRELIVGLVA
ECCCCCEECCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGDSGDAEYYEALVGLALLELKRARRSQLKIPLPDDADRRLMSLCQAVMAAPSLDVPFEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
HAENAGASVRTLARLFKEGLGMGFAEWRRQVQLATAVAELIQGVPVSAIARELGYSPSSF
HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
SDMFRRELGVAPSQFDGGPLAG
HHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]