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The map label for this gene is clpS [H]

Identifier: 77459813

GI number: 77459813

Start: 4059294

End: 4059677

Strand: Reverse

Name: clpS [H]

Synonym: Pfl01_3591

Alternate gene names: 77459813

Gene position: 4059677-4059294 (Counterclockwise)

Preceding gene: 77459815

Following gene: 77459812

Centisome position: 63.05

GC content: 53.65

Gene sequence:

>384_bases
ATGCATGCAATCAGCCAGATTCGACTAACATTCAATCAGGATCGCCCGCTTCTCCAAAAGGATCTTCCACAGGAGCACGA
CGACGATTCGGCAGGCGTTGCTGTTCAGGAAGCAAAGCCTGCGTTACAGGCGCCGCCGATGTACAAGGTGGTTTTGTTCA
ATGATGACTACACACCGATGGATTTCGTCGTCGAAGTGCTCGAGGTGTTTTTTAACCTGAATCGCGAGCTGGCGACCAAG
GTCATGCTGGCCGTCCACACAGAAGGGCGGGCAGTATGTGGAGTGTTTACCCGCGACATCGCCGAGACAAAGGCCATGCA
GGTCAACCAGTACGCCAGGGAAAGCCAGCATCCGCTACTCTGTGAAATCGAGAAGGACGGTTAA

Upstream 100 bases:

>100_bases
ACCGTTTTCCCGATAGTCAAGGTGACCGGGCAGTCGGAGTTGAAAACGTGTCAAGCCGCCCCCACCACTGTATTTGCACA
ACTGACGAACCTTTCTTTCC

Downstream 100 bases:

>100_bases
TCGCCGACCACTTGGGTATGAGGTGAAGCTATGTTAAACCGCGAGCTCGAAGTCACCCTCAATCTTGCCTTCAAGGAGGC
ACGTTCGAAACGTCATGAGT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MHAISQIRLTFNQDRPLLQKDLPQEHDDDSAGVAVQEAKPALQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATK
VMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLLCEIEKDG

Sequences:

>Translated_127_residues
MHAISQIRLTFNQDRPLLQKDLPQEHDDDSAGVAVQEAKPALQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATK
VMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLLCEIEKDG
>Mature_127_residues
MHAISQIRLTFNQDRPLLQKDLPQEHDDDSAGVAVQEAKPALQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATK
VMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLLCEIEKDG

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=93, Percent_Identity=58.0645161290323, Blast_Score=124, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 14402; Mature: 14402

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAISQIRLTFNQDRPLLQKDLPQEHDDDSAGVAVQEAKPALQAPPMYKVVLFNDDYTPM
CCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCH
DFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLL
HHHHHHHHHHHCCCHHHHHHHHHEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEE
CEIEKDG
EEEECCC
>Mature Secondary Structure
MHAISQIRLTFNQDRPLLQKDLPQEHDDDSAGVAVQEAKPALQAPPMYKVVLFNDDYTPM
CCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCH
DFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLL
HHHHHHHHHHHCCCHHHHHHHHHEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEE
CEIEKDG
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA