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The map label for this gene is cydA [H]

Identifier: 77459608

GI number: 77459608

Start: 3860530

End: 3861945

Strand: Reverse

Name: cydA [H]

Synonym: Pfl01_3386

Alternate gene names: 77459608

Gene position: 3861945-3860530 (Counterclockwise)

Preceding gene: 77459609

Following gene: 77459607

Centisome position: 59.98

GC content: 61.72

Gene sequence:

>1416_bases
ATGTTCAACCTGGAGGCACTGGACCTGGCGCGAATTCAATTCGCGTTCACGGTTTCGTTCCACATCATTTTCCCGGCGAT
CACCATTGGTCTCGCGAGTTTCCTGGCGGTGCTTGAAGGCCTGTGGCTGAAAACCGGTAACGACACTTACCGCGATCTCT
ACCACTTCTGGTCGAAGATCTTCGCCGTCAACTTCGGCATGGGCGTGGTCTCCGGTCTGGTCATGGCGTACCAGTTCGGC
ACCAACTGGAGCGGGTTCTCTGATTTTGCCGGCAGCGTCACCGGGCCGTTGCTGACCTATGAAGTGCTGACCGCGTTCTT
CCTCGAGGCCGGGTTTCTCGGGGTGATGCTGTTCGGCTGGAACCGCGTCGGCCGTGGCTTGCACTTCTTCGCCACGGTGA
TGGTCGCCATCGGCACGCTGATCTCGACTTTCTGGATTCTTGCCTCCAACAGCTGGATGCAGACCCCGCAGGGTTTCGAA
ATCGTCGACGGTCGGGTAATGCCGGTCGACTGGCTGGCGATCGTGTTCAACCCGTCGTTCCCGTTCCGGCTGGCGCACAT
GGCGATTGCCGCGTTCGTTGCCACAGCGTTCTTTGTCGGCGCTTCGGCGGCCTGGCATTTGCTACGTGGCAACGACAGCA
AACCGGTGCGCAAGATGTTTTCCATGGCGCTGTGGATGGCGCTTATCGTCGCGCCGATTCAAGCGGTGGTGGGTGACGCC
CATGGCTTGAACACCGTGGAACATCAACCGGCGAAAATCGCCGCCATCGAGGGCCACTGGGAAAACGCCGACAACGGGCC
GACCCCGCTGGTGCTGTTCGGCATCCCGGACATGCAGGCGGAGAAGACCAAATACGCGATCGAGATTCCGTACCTCGGCA
GCCTGATCCTCACCCACAGCCTCGACAAGCAGATCCCGGCGCTCAAGAGCTTCCCGAAAGAAGACCGGCCGAATTCGACC
GTGATTTTCTGGAGCTTCCGCGTGATGGCCGGGCTGGGCATGTTGATGATCCTCGTCGGTGTGGTGGGGCTGGCGCTGCG
GCGCAACGGCAAGGTCTACCGGCATCGCGGCTTCCAGCGGCTGGTGTTGCTGATGGGGCCGAGCGGACTGATTGCGCTGC
TGGCCGGTTGGATCACCACTGAAGTCGGGCGCCAGCCGTGGGTGGTGTACGGCCTGATGCGCACTCATGACGCGGCGTCC
CATCACTCGGTGGCGCAGATGAGCACGTCGCTGGCGCTGTTCGTCGTCATCTACTGCTCGGTGTTCACCGTGGGCATCGG
CTACATGATGAAACTGGTGAGCAAGGGCCCGCAGCCGCACCACGAACATCCGCCCGAAGGCACTCAGGTGCAGACCCCGC
GCCGGCCACTTTCGGCGGTTACCGACAACCTCGAATCCGCGACCCGGATCCACTGA

Upstream 100 bases:

>100_bases
GCGATCCAACCCTTCTGCAATTTGACTGGCTGCAGGCGTTCGCGCCTGGCGGTGGCCCGGCCGTGTGCTGCCGCTTTTCA
GCCTTGATGAGGACATCATC

Downstream 100 bases:

>100_bases
AAAAGGAGCGTTGAGTCATGGGTATTCAAGGTATCGATCTCTCGTTGATCTGGGGCGTGATCATTGCCTTCGGGGTGATG
ATGTACGTGATCATGGACGG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MFNLEALDLARIQFAFTVSFHIIFPAITIGLASFLAVLEGLWLKTGNDTYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSGFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGRGLHFFATVMVAIGTLISTFWILASNSWMQTPQGFE
IVDGRVMPVDWLAIVFNPSFPFRLAHMAIAAFVATAFFVGASAAWHLLRGNDSKPVRKMFSMALWMALIVAPIQAVVGDA
HGLNTVEHQPAKIAAIEGHWENADNGPTPLVLFGIPDMQAEKTKYAIEIPYLGSLILTHSLDKQIPALKSFPKEDRPNST
VIFWSFRVMAGLGMLMILVGVVGLALRRNGKVYRHRGFQRLVLLMGPSGLIALLAGWITTEVGRQPWVVYGLMRTHDAAS
HHSVAQMSTSLALFVVIYCSVFTVGIGYMMKLVSKGPQPHHEHPPEGTQVQTPRRPLSAVTDNLESATRIH

Sequences:

>Translated_471_residues
MFNLEALDLARIQFAFTVSFHIIFPAITIGLASFLAVLEGLWLKTGNDTYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSGFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGRGLHFFATVMVAIGTLISTFWILASNSWMQTPQGFE
IVDGRVMPVDWLAIVFNPSFPFRLAHMAIAAFVATAFFVGASAAWHLLRGNDSKPVRKMFSMALWMALIVAPIQAVVGDA
HGLNTVEHQPAKIAAIEGHWENADNGPTPLVLFGIPDMQAEKTKYAIEIPYLGSLILTHSLDKQIPALKSFPKEDRPNST
VIFWSFRVMAGLGMLMILVGVVGLALRRNGKVYRHRGFQRLVLLMGPSGLIALLAGWITTEVGRQPWVVYGLMRTHDAAS
HHSVAQMSTSLALFVVIYCSVFTVGIGYMMKLVSKGPQPHHEHPPEGTQVQTPRRPLSAVTDNLESATRIH
>Mature_471_residues
MFNLEALDLARIQFAFTVSFHIIFPAITIGLASFLAVLEGLWLKTGNDTYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSGFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGRGLHFFATVMVAIGTLISTFWILASNSWMQTPQGFE
IVDGRVMPVDWLAIVFNPSFPFRLAHMAIAAFVATAFFVGASAAWHLLRGNDSKPVRKMFSMALWMALIVAPIQAVVGDA
HGLNTVEHQPAKIAAIEGHWENADNGPTPLVLFGIPDMQAEKTKYAIEIPYLGSLILTHSLDKQIPALKSFPKEDRPNST
VIFWSFRVMAGLGMLMILVGVVGLALRRNGKVYRHRGFQRLVLLMGPSGLIALLAGWITTEVGRQPWVVYGLMRTHDAAS
HHSVAQMSTSLALFVVIYCSVFTVGIGYMMKLVSKGPQPHHEHPPEGTQVQTPRRPLSAVTDNLESATRIH

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=37.6582278481013, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI87081779, Length=311, Percent_Identity=38.5852090032154, Blast_Score=236, Evalue=3e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51960; Mature: 51960

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLEALDLARIQFAFTVSFHIIFPAITIGLASFLAVLEGLWLKTGNDTYRDLYHFWSKI
CCCCCHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSGFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NRVGRGLHFFATVMVAIGTLISTFWILASNSWMQTPQGFEIVDGRVMPVDWLAIVFNPSF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECEEEEEEEECCCC
PFRLAHMAIAAFVATAFFVGASAAWHLLRGNDSKPVRKMFSMALWMALIVAPIQAVVGDA
CHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGLNTVEHQPAKIAAIEGHWENADNGPTPLVLFGIPDMQAEKTKYAIEIPYLGSLILTHS
CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHH
LDKQIPALKSFPKEDRPNSTVIFWSFRVMAGLGMLMILVGVVGLALRRNGKVYRHRGFQR
HHHCCCHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHE
LVLLMGPSGLIALLAGWITTEVGRQPWVVYGLMRTHDAASHHSVAQMSTSLALFVVIYCS
EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VFTVGIGYMMKLVSKGPQPHHEHPPEGTQVQTPRRPLSAVTDNLESATRIH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCC
>Mature Secondary Structure
MFNLEALDLARIQFAFTVSFHIIFPAITIGLASFLAVLEGLWLKTGNDTYRDLYHFWSKI
CCCCCHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSGFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NRVGRGLHFFATVMVAIGTLISTFWILASNSWMQTPQGFEIVDGRVMPVDWLAIVFNPSF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECEEEEEEEECCCC
PFRLAHMAIAAFVATAFFVGASAAWHLLRGNDSKPVRKMFSMALWMALIVAPIQAVVGDA
CHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGLNTVEHQPAKIAAIEGHWENADNGPTPLVLFGIPDMQAEKTKYAIEIPYLGSLILTHS
CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHH
LDKQIPALKSFPKEDRPNSTVIFWSFRVMAGLGMLMILVGVVGLALRRNGKVYRHRGFQR
HHHCCCHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHE
LVLLMGPSGLIALLAGWITTEVGRQPWVVYGLMRTHDAASHHSVAQMSTSLALFVVIYCS
EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VFTVGIGYMMKLVSKGPQPHHEHPPEGTQVQTPRRPLSAVTDNLESATRIH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]