Click here to switch to the map view.

The map label for this gene is ycaN [H]

Identifier: 77459501

GI number: 77459501

Start: 3762157

End: 3763062

Strand: Direct

Name: ycaN [H]

Synonym: Pfl01_3279

Alternate gene names: 77459501

Gene position: 3762157-3763062 (Clockwise)

Preceding gene: 77459498

Following gene: 77459504

Centisome position: 58.43

GC content: 60.71

Gene sequence:

>906_bases
ATGAAAACCCCGTCCACGGCGGATCTGCCGATCTTTCTCTGCATCGCCCAGCACCTGAATTTCAGCCGTGCGGCGGTGGA
TCTGGGCCTGACACCGTCCGCGCTGAGTCATTCGTTGCGGGCTCTGGAAAATCGCCTAGGCGTGCGCCTGTTCAATCGCA
CCACCCGCAGTGTGGCGCTGACCGAAGCGGGCGAGCGGTTATACGCGCGGCTGAAACCGGCGTTTCGCGACATCGACGAC
GCCCTCGAAGACCTCAATCACTTTCGCGACAAGCCTTCCGGCAACCTGCGTATCACTGCCGGGCGCCAGGCCTGTGAGCT
GGTGCTGCTGCCTATAGCCAGCGAGTTTCTGAAGATTTACCCGGACATCCGTCTGGAAGTGGTCGAAAGCGATGCGCTAC
TGGATATCGTCGCCTCCGGATTCGATGCAGGTGTACGCTTCGGCAATCGGCTGGAAGCTGACATGGTGTCGATGCCCATC
GGACCGAATCTGCGTTCAGTGGTGGTCGGCGCACCCGGCTTTTTCGAACGACATCCCGCGCCACAGAAACCTGAAGATTT
GCATGCCCTTCCCTGCATCCGACATCGGTTCCCGAGCGGTTCGATGTACCGCTGGGAATTCGAACGGGGTGGTATAGAAC
AGGAAATCGAGATCAACGGCCCGCTGACGCTGGGCGATGTCAGCCTGATGATCGGCCCGGCATTGCAGGGCTTGGGACTG
GCCTATGTGTTCGAGAACATGGCCCGGGAACATCTGGCGAGCGGGCGGCTGGTACAGGTGCTGGCGGACTGGTGCCCGTA
CTATCCCGGCCTGCATCTGTATTACCCGAGTCGGCGCCACGTGCCGGCACCGCTCAAGGCGTTTATCGATTTCGCCCGCA
ATGCCAGCGAAGGCAAAACGGGCTAA

Upstream 100 bases:

>100_bases
ATTGCCGGGGCCTTCTTGATGAGTTGAGTCGACTTTAAAGCCGTGCTACTGATGTGATAATCCCAACAAATTTGCATGAC
TTTGTGAAAGGCGTTCACAA

Downstream 100 bases:

>100_bases
GCCGCTTTACAAATACTTCAACCAGGCAATGTCGCGACGCCGGGCCTTCAATGCCGAAAACCAGCGCACGGCCGGGAACA
ACGCGACCGCCAGCACCATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKTPSTADLPIFLCIAQHLNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVALTEAGERLYARLKPAFRDIDD
ALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIYPDIRLEVVESDALLDIVASGFDAGVRFGNRLEADMVSMPI
GPNLRSVVVGAPGFFERHPAPQKPEDLHALPCIRHRFPSGSMYRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGL
AYVFENMAREHLASGRLVQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDFARNASEGKTG

Sequences:

>Translated_301_residues
MKTPSTADLPIFLCIAQHLNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVALTEAGERLYARLKPAFRDIDD
ALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIYPDIRLEVVESDALLDIVASGFDAGVRFGNRLEADMVSMPI
GPNLRSVVVGAPGFFERHPAPQKPEDLHALPCIRHRFPSGSMYRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGL
AYVFENMAREHLASGRLVQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDFARNASEGKTG
>Mature_301_residues
MKTPSTADLPIFLCIAQHLNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVALTEAGERLYARLKPAFRDIDD
ALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIYPDIRLEVVESDALLDIVASGFDAGVRFGNRLEADMVSMPI
GPNLRSVVVGAPGFFERHPAPQKPEDLHALPCIRHRFPSGSMYRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGL
AYVFENMAREHLASGRLVQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDFARNASEGKTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=41.7808219178082, Blast_Score=254, Evalue=4e-69,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=40.2061855670103, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=29.8611111111111, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=30.0341296928328, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=31.2280701754386, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1789440, Length=261, Percent_Identity=26.4367816091954, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789639, Length=238, Percent_Identity=28.1512605042017, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1786448, Length=280, Percent_Identity=30, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788706, Length=266, Percent_Identity=26.6917293233083, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=38.0165289256198, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=27.1062271062271, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=171, Percent_Identity=28.6549707602339, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=122, Percent_Identity=33.6065573770492, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=158, Percent_Identity=25.9493670886076, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33355; Mature: 33355

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSTADLPIFLCIAQHLNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVAL
CCCCCCCCCHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHHHHHCCHHCCCCHHHHHH
TEAGERLYARLKPAFRDIDDALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHEEEHHHHHHHHHHC
PDIRLEVVESDALLDIVASGFDAGVRFGNRLEADMVSMPIGPNLRSVVVGAPGFFERHPA
CCCEEEEECCHHHHHHHHCCHHHHHHCCCCCCHHHEECCCCCCCCEEEEECCCHHHCCCC
PQKPEDLHALPCIRHRFPSGSMYRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGL
CCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCEEECHHHHHHHHHHHHHHH
AYVFENMAREHLASGRLVQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDFARNASEGKT
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
G
C
>Mature Secondary Structure
MKTPSTADLPIFLCIAQHLNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVAL
CCCCCCCCCHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHHHHHCCHHCCCCHHHHHH
TEAGERLYARLKPAFRDIDDALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHEEEHHHHHHHHHHC
PDIRLEVVESDALLDIVASGFDAGVRFGNRLEADMVSMPIGPNLRSVVVGAPGFFERHPA
CCCEEEEECCHHHHHHHHCCHHHHHHCCCCCCHHHEECCCCCCCCEEEEECCCHHHCCCC
PQKPEDLHALPCIRHRFPSGSMYRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGL
CCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCEEECHHHHHHHHHHHHHHH
AYVFENMAREHLASGRLVQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDFARNASEGKT
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]