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The map label for this gene is ydhC [H]

Identifier: 77459458

GI number: 77459458

Start: 3718388

End: 3719140

Strand: Direct

Name: ydhC [H]

Synonym: Pfl01_3236

Alternate gene names: 77459458

Gene position: 3718388-3719140 (Clockwise)

Preceding gene: 77459457

Following gene: 77459459

Centisome position: 57.75

GC content: 62.02

Gene sequence:

>753_bases
ATGAAACGCCTGCCACTCGACGACAGCTTCAAGGTCAATCGCAACCCCGTCACCCTGCGCGAAATCGTGCTGGATAAACT
GCGAAGCGCCATCATGAACTTCCAGCTGCTGCCGGGCGATCGCCTGGTGGAGCGCGATCTGTGCGATCGCCTGGGCGTGA
GCCGTACGTCGGTGCGTGAAGCCTTGCGTCACCTGGAATCCGAAGGTCTGGTGGAATTCGCCGACGCCAAGGGCCCGCGC
GTGGCGATCATTACCCTCGCCGATGCCGTCGACATTTATGAGCTGCGTTGCGTGCTCGAAGGCCTGATCGTCCAGCTGTT
CACCCTGCGTGCCAAGGCCAAGGACATCAAGGCCCTGGAAAAAGCCCTCGACGAGAACCGCAAGGCGCTCAAGGACGGCG
AGCTGCAACAGGTGATCGACTCGGTGCAGGGTTTCTACGACGTGCTGCTGGAAGGCTCGGGCAACCATGTCGCGGCCACT
CAACTGCGTCAGTTGCAGGCGCGCATCAGCTACCTGCGGGCGACGTCGGTGTCACAGGAAAACCGTCGCGGCGCGAGCAA
CCAGGAAATGGAAAAAATGGTCGAGGCGATCAAGAGCGGCGATCCGCTGGCGGCGCATCAGGCGTGCGTCGATCACGTTC
GCGCCGCCGCTGCCGTGGCCCTCGATTATCTGAAGCGCAAACAGGAAGAGACAGGCGCCACTCCACCGATCACCCTGCCC
ATCGCGCTGAAAGAACCGCGCATAGGTCACTGA

Upstream 100 bases:

>100_bases
CGTGAAGCCTTCGCCGAAGCCGACGCCGAGGCCTCCAGTTAACCCCTCGGCTGTTTTGATGCCCGTCTGGCATGGACAGC
CACCTTAAAGAGCGGACCCC

Downstream 100 bases:

>100_bases
CATGTTCAGCCCGAGCTTTTGCCCGAAATGCGGTGGCGCCGACCTCGGTCAGCAGGTGCCGCCGGGCGATACGCACGAGC
GCCTGATGTGCCGCGGTTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKRLPLDDSFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVREALRHLESEGLVEFADAKGPR
VAIITLADAVDIYELRCVLEGLIVQLFTLRAKAKDIKALEKALDENRKALKDGELQQVIDSVQGFYDVLLEGSGNHVAAT
QLRQLQARISYLRATSVSQENRRGASNQEMEKMVEAIKSGDPLAAHQACVDHVRAAAAVALDYLKRKQEETGATPPITLP
IALKEPRIGH

Sequences:

>Translated_250_residues
MKRLPLDDSFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVREALRHLESEGLVEFADAKGPR
VAIITLADAVDIYELRCVLEGLIVQLFTLRAKAKDIKALEKALDENRKALKDGELQQVIDSVQGFYDVLLEGSGNHVAAT
QLRQLQARISYLRATSVSQENRRGASNQEMEKMVEAIKSGDPLAAHQACVDHVRAAAAVALDYLKRKQEETGATPPITLP
IALKEPRIGH
>Mature_250_residues
MKRLPLDDSFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVREALRHLESEGLVEFADAKGPR
VAIITLADAVDIYELRCVLEGLIVQLFTLRAKAKDIKALEKALDENRKALKDGELQQVIDSVQGFYDVLLEGSGNHVAAT
QLRQLQARISYLRATSVSQENRRGASNQEMEKMVEAIKSGDPLAAHQACVDHVRAAAAVALDYLKRKQEETGATPPITLP
IALKEPRIGH

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27780; Mature: 27780

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLPLDDSFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVRE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH
ALRHLESEGLVEFADAKGPRVAIITLADAVDIYELRCVLEGLIVQLFTLRAKAKDIKALE
HHHHHHHCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KALDENRKALKDGELQQVIDSVQGFYDVLLEGSGNHVAATQLRQLQARISYLRATSVSQE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
NRRGASNQEMEKMVEAIKSGDPLAAHQACVDHVRAAAAVALDYLKRKQEETGATPPITLP
HHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
IALKEPRIGH
EEECCCCCCC
>Mature Secondary Structure
MKRLPLDDSFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVRE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH
ALRHLESEGLVEFADAKGPRVAIITLADAVDIYELRCVLEGLIVQLFTLRAKAKDIKALE
HHHHHHHCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KALDENRKALKDGELQQVIDSVQGFYDVLLEGSGNHVAATQLRQLQARISYLRATSVSQE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
NRRGASNQEMEKMVEAIKSGDPLAAHQACVDHVRAAAAVALDYLKRKQEETGATPPITLP
HHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
IALKEPRIGH
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]