| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459410
Identifier: 77459410
GI number: 77459410
Start: 3666752
End: 3667474
Strand: Reverse
Name: 77459410
Synonym: Pfl01_3188
Alternate gene names: NA
Gene position: 3667474-3666752 (Counterclockwise)
Preceding gene: 77459411
Following gene: 77459409
Centisome position: 56.96
GC content: 52.84
Gene sequence:
>723_bases ATGGCCGCCAGTTTTGCGACACAGGCAACTGCTCAGGAGATTAAGCCAGGCGAGTTCATGTGCCCTATACCGGTGGCTGT TAATGATCGAGCGGCTACTCGCGAGGCGATCATCAAACGGGTTCGGGATTTGAAGGTCACGTTTGTCGAGCGCTCCTCCT GGAAAGCGTTGGATGGCAAGAAGGACATGGTCAAGGATTGGGACTACACCATGATTGCTTTGCACCACGCGGGCCGCAGC CATAGCTGCACTCCCGGTGCGGAGCAGATGCAAGAAATCCAGAAAGGACACCTGAGTCAGAAGTACGACGATATTGGCTA CCACTACGGCATTGATTGCACGGGGCAGGTTTTTGAAGGTCGTGACATTCGGCTTCAGGGCTCAAGTGTTCTGAAATACA ACACAGGGCTGATTGGCATCGTTCTGCTGGAAAACCTGACGACACCGGAGGAGGGTGGCGATTGGGTCGCCAAAGGTCGG GTGGCTCTGGATAGCATCGGTTACAGCACCACAAACGTTATTCCCAAAGAGCAAATCGTTTCTCTGATGCACCTGATCGA CGCATTGAAAAGCGTTTTTTTTATCAAGAATTTTGGTGGCCACCGGGAATATCCAGGGCAAGGCTCTGAAGGGAAAATTT GCCCCGGCAACATTGGAATGGAGCTGGTCAGAAATATCAGAGCTCAAACCCAACTGCTTCCACCGCCGGCGCCACAGCAA TGA
Upstream 100 bases:
>100_bases TCGCGCACATCAAGACGCCGACGCCCAATGCCCAAATCTCACTTCACATCACGTTCAATGCCCCAGCTCGAACGCTTCAT GAATTTTCGGAGAAACAGTA
Downstream 100 bases:
>100_bases AAAAGCTTTTAATCGCAGCAATCCTCGCTGTAGTAACCGTGCTCTACGTCGGCTACTACGAAGCCCTTGAGGACGGAGAC ATCGAGACCATTGTCTTCAT
Product: animal peptidoglycan recognition protein PGRP
Products: NA
Alternate protein names: Animal Peptidoglycan Recognition Protein PGRP
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MAASFATQATAQEIKPGEFMCPIPVAVNDRAATREAIIKRVRDLKVTFVERSSWKALDGKKDMVKDWDYTMIALHHAGRS HSCTPGAEQMQEIQKGHLSQKYDDIGYHYGIDCTGQVFEGRDIRLQGSSVLKYNTGLIGIVLLENLTTPEEGGDWVAKGR VALDSIGYSTTNVIPKEQIVSLMHLIDALKSVFFIKNFGGHREYPGQGSEGKICPGNIGMELVRNIRAQTQLLPPPAPQQ
Sequences:
>Translated_240_residues MAASFATQATAQEIKPGEFMCPIPVAVNDRAATREAIIKRVRDLKVTFVERSSWKALDGKKDMVKDWDYTMIALHHAGRS HSCTPGAEQMQEIQKGHLSQKYDDIGYHYGIDCTGQVFEGRDIRLQGSSVLKYNTGLIGIVLLENLTTPEEGGDWVAKGR VALDSIGYSTTNVIPKEQIVSLMHLIDALKSVFFIKNFGGHREYPGQGSEGKICPGNIGMELVRNIRAQTQLLPPPAPQQ >Mature_239_residues AASFATQATAQEIKPGEFMCPIPVAVNDRAATREAIIKRVRDLKVTFVERSSWKALDGKKDMVKDWDYTMIALHHAGRSH SCTPGAEQMQEIQKGHLSQKYDDIGYHYGIDCTGQVFEGRDIRLQGSSVLKYNTGLIGIVLLENLTTPEEGGDWVAKGRV ALDSIGYSTTNVIPKEQIVSLMHLIDALKSVFFIKNFGGHREYPGQGSEGKICPGNIGMELVRNIRAQTQLLPPPAPQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26498; Mature: 26366
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASFATQATAQEIKPGEFMCPIPVAVNDRAATREAIIKRVRDLKVTFVERSSWKALDGK CCCCHHHHHHHHHCCCCCEECCCCEEECCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC KDMVKDWDYTMIALHHAGRSHSCTPGAEQMQEIQKGHLSQKYDDIGYHYGIDCTGQVFEG HHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECC RDIRLQGSSVLKYNTGLIGIVLLENLTTPEEGGDWVAKGRVALDSIGYSTTNVIPKEQIV CEEEEECCEEEEECCCEEEEEEECCCCCCCCCCCEEECCEEEEHHCCCCCCCCCCHHHHH SLMHLIDALKSVFFIKNFGGHREYPGQGSEGKICPGNIGMELVRNIRAQTQLLPPPAPQQ HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AASFATQATAQEIKPGEFMCPIPVAVNDRAATREAIIKRVRDLKVTFVERSSWKALDGK CCCHHHHHHHHHCCCCCEECCCCEEECCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC KDMVKDWDYTMIALHHAGRSHSCTPGAEQMQEIQKGHLSQKYDDIGYHYGIDCTGQVFEG HHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECC RDIRLQGSSVLKYNTGLIGIVLLENLTTPEEGGDWVAKGRVALDSIGYSTTNVIPKEQIV CEEEEECCEEEEECCCEEEEEEECCCCCCCCCCCEEECCEEEEHHCCCCCCCCCCHHHHH SLMHLIDALKSVFFIKNFGGHREYPGQGSEGKICPGNIGMELVRNIRAQTQLLPPPAPQQ HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA