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The map label for this gene is yvoA [H]

Identifier: 77459386

GI number: 77459386

Start: 3632821

End: 3633567

Strand: Reverse

Name: yvoA [H]

Synonym: Pfl01_3164

Alternate gene names: 77459386

Gene position: 3633567-3632821 (Counterclockwise)

Preceding gene: 77459387

Following gene: 77459385

Centisome position: 56.44

GC content: 62.25

Gene sequence:

>747_bases
ATGACCGATAACGTTCTCTCCCTGGGCAGCGTCCCGCTGCACACCCAACTGCGCGACGTACTGCGCGCCCGCATCCTCGA
CGGCGAATACCCGCAGGACAGCCAGATGCCGTCCGAAAGCGAGCTTGGAACGCTGTTCAAGGTCAGCCGCATCACCGTGC
GCCAGGCCCTGGGCGATCTGCAGAAAGAAGGGCTGATCTTCAAGATCCACGGCAAAGGCACCTTCGTCGCCAAGCCCAAG
ACCTTTCAAAACGTCAGTACCCTGCAAGGCCTCGCCGAGTCCATGACCGGCCGTGGCTACGAGGTGATCAACCGCCTGCG
CAGCTTCAAATTCATCGCCGCCGACAAACTGGTTGCCGAGCGTTTGCAGGTCGCCGAAGGCGAAATCGTCGCGCAGATAA
AGCGTGTACGGCTGATCAACCGCGAGCCGATTTCGCTGGAAATCACCTACCTGCCCAAAGCCGTCGGCGAACGGCTGGAG
AAGGCCGATCTGGTCACCCGCGACATTTTCCTGATCCTCGAGAACGACTGCGGCATAGCCCTCGGCCATGCCGATCTGGC
CATCGACGCGGTGCTGGCCGACAGCGACCTGACCCAGGCACTGAACGTCGAGGCCGGCTCGCCGATCATGCGCATCGAGC
GGCTGACCCACGACGCTCACGGCCAGCCGCTGGACTTCGAACACCTTTACTACCGTGGCGATGCGTTCCAGTACCGCCTG
CGGATCGACCGGCAAAAAGGGGCGTGA

Upstream 100 bases:

>100_bases
ACTGAAGGCGCATCTAACCTTATGCTCATTCGGTATTTCTCAAGCTTGTCATAACGTCTCTAAGATCACGTCATAACTCG
TTATGACAAGTGATTCCGTG

Downstream 100 bases:

>100_bases
CCATGACCCGCAACACCCTCGAACAGGAATACGACATCGTCGTGATCGGCGGCGGCACTGCCGGCCCGATGGCCGCGATC
AAGGCCAAGGAAAAGAACAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTDNVLSLGSVPLHTQLRDVLRARILDGEYPQDSQMPSESELGTLFKVSRITVRQALGDLQKEGLIFKIHGKGTFVAKPK
TFQNVSTLQGLAESMTGRGYEVINRLRSFKFIAADKLVAERLQVAEGEIVAQIKRVRLINREPISLEITYLPKAVGERLE
KADLVTRDIFLILENDCGIALGHADLAIDAVLADSDLTQALNVEAGSPIMRIERLTHDAHGQPLDFEHLYYRGDAFQYRL
RIDRQKGA

Sequences:

>Translated_248_residues
MTDNVLSLGSVPLHTQLRDVLRARILDGEYPQDSQMPSESELGTLFKVSRITVRQALGDLQKEGLIFKIHGKGTFVAKPK
TFQNVSTLQGLAESMTGRGYEVINRLRSFKFIAADKLVAERLQVAEGEIVAQIKRVRLINREPISLEITYLPKAVGERLE
KADLVTRDIFLILENDCGIALGHADLAIDAVLADSDLTQALNVEAGSPIMRIERLTHDAHGQPLDFEHLYYRGDAFQYRL
RIDRQKGA
>Mature_247_residues
TDNVLSLGSVPLHTQLRDVLRARILDGEYPQDSQMPSESELGTLFKVSRITVRQALGDLQKEGLIFKIHGKGTFVAKPKT
FQNVSTLQGLAESMTGRGYEVINRLRSFKFIAADKLVAERLQVAEGEIVAQIKRVRLINREPISLEITYLPKAVGERLEK
ADLVTRDIFLILENDCGIALGHADLAIDAVLADSDLTQALNVEAGSPIMRIERLTHDAHGQPLDFEHLYYRGDAFQYRLR
IDRQKGA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=27.7056277056277, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786950, Length=240, Percent_Identity=25.4166666666667, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082252, Length=225, Percent_Identity=24.8888888888889, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788418, Length=238, Percent_Identity=20.5882352941176, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27735; Mature: 27604

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNVLSLGSVPLHTQLRDVLRARILDGEYPQDSQMPSESELGTLFKVSRITVRQALGDL
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QKEGLIFKIHGKGTFVAKPKTFQNVSTLQGLAESMTGRGYEVINRLRSFKFIAADKLVAE
HHCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RLQVAEGEIVAQIKRVRLINREPISLEITYLPKAVGERLEKADLVTRDIFLILENDCGIA
HHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHEEEEEEEECCCCEE
LGHADLAIDAVLADSDLTQALNVEAGSPIMRIERLTHDAHGQPLDFEHLYYRGDAFQYRL
ECCHHHEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHEEEECCEEEEEE
RIDRQKGA
EEECCCCC
>Mature Secondary Structure 
TDNVLSLGSVPLHTQLRDVLRARILDGEYPQDSQMPSESELGTLFKVSRITVRQALGDL
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QKEGLIFKIHGKGTFVAKPKTFQNVSTLQGLAESMTGRGYEVINRLRSFKFIAADKLVAE
HHCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RLQVAEGEIVAQIKRVRLINREPISLEITYLPKAVGERLEKADLVTRDIFLILENDCGIA
HHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHEEEEEEEECCCCEE
LGHADLAIDAVLADSDLTQALNVEAGSPIMRIERLTHDAHGQPLDFEHLYYRGDAFQYRL
ECCHHHEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHEEEECCEEEEEE
RIDRQKGA
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]